RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 MUCL1Q96DR8 90 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 GPX7Q96SL4 187 aaPredicted RBP11.13□□□□□ -0.63
PNKP-217ENST00000625216 ZNF587Q96SQ5 575 aaPredicted RBP11.13□□□□□ -0.63
PNKP-217ENST00000625216 CCL19Q99731 98 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 ZNF696Q9H7X3 374 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 DLL4Q9NR61 685 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 TVP23BQ9NYZ1 205 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 PRSS50Q9UI38 385 aa11.13□□□□□ -0.63
PNKP-217ENST00000625216 SETD2Q9BYW2 2564 aaPredicted RBP11.12□□□□□ -0.63
PNKP-217ENST00000625216 LIPT2A6NK58 231 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 SLC1A7O00341 560 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 HS3ST1O14792 307 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 SURF4O15260 269 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 OR2T1O43869 369 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 TNFAIP8O95379 198 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 SLC2A10O95528 541 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 SNRPGP62308 76 aaKnown RBP11.12□□□□□ -0.63
PNKP-217ENST00000625216 EFNB1P98172 346 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 TEKQ02763 1124 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 RPL18Q07020 188 aaKnown RBP11.12□□□□□ -0.63
PNKP-217ENST00000625216 TSC22D1Q15714 1073 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 NCMAPQ5T1S8 102 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 C1QTNF12Q5T7M4 302 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 CASP12Q6UXS9 341 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 WFDC11Q8NEX6 87 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 OR5J2Q8NH18 312 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 HDAC2Q92769 488 aaKnown RBP11.12□□□□□ -0.63
PNKP-217ENST00000625216 ZNF566Q969W8 418 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 IL4I1Q96RQ9 567 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 IFT27Q9BW83 186 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 SF3B5Q9BWJ5 86 aaKnown RBP11.12□□□□□ -0.63
PNKP-217ENST00000625216 ASB6Q9NWX5 421 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 DNAJC27Q9NZQ0 273 aa11.12□□□□□ -0.63
PNKP-217ENST00000625216 MAGEA13PA6NCF6 341 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 TRIM64A6NGJ6 449 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 OR5H1A6NKK0 313 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 BLOC1S5-TXNDC5H3BN57 136 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 XPNPEP2O43895 674 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 LYZL6O75951 148 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 VAMP5O95183 116 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 CD3EP07766 207 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 PAX1P15863 534 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 IGHV1-2P23083 117 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 NUDT6P53370 316 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 PRPS1P60891 318 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 SLC17A1Q14916 467 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 PPA1Q15181 289 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 SNAPC1Q16533 368 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ANKDD1AQ495B1 522 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 KCTD21Q4G0X4 260 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ALG10Q5BKT4 473 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 RBM48Q5RL73 367 aaKnown RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 SLC35F1Q5T1Q4 408 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 OR7E24Q6IFN5 339 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ALKBH2Q6NS38 261 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 PTCHD4Q6ZW05 846 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 FAM122BQ7Z309 247 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 BCDIN3DQ7Z5W3 292 aaKnown RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 UBE2J2Q8N2K1 259 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ZNF433Q8N7K0 673 aaPredicted RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 OR8J1Q8NGP2 316 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 TMEM163Q8TC26 289 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 TMEM171Q8WVE6 324 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 IGFBPL1Q8WX77 278 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 SGCDQ92629 289 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 AKAP1Q92667 903 aaKnown RBP eCLIP11.11□□□□□ -0.63
PNKP-217ENST00000625216 SLC38A2Q96QD8 506 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 RHNO1Q9BSD3 238 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 KATNB1Q9BVA0 655 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 TAPBPLQ9BX59 468 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ASPNQ9BXN1 380 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 PRRG3Q9BZD7 231 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 GSX2Q9BZM3 304 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 CXorf56Q9H5V9 222 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 NRIP3Q9NQ35 241 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 HINT3Q9NQE9 182 aaKnown RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 PAK1IP1Q9NWT1 392 aaPredicted RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 MRPL39Q9NYK5 338 aaKnown RBP11.11□□□□□ -0.63
PNKP-217ENST00000625216 TAS2R5Q9NYW4 299 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 MALT1Q9UDY8 824 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 BAIAP2Q9UQB8 552 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 MYRFQ9Y2G1 1151 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ADAM18Q9Y3Q7 739 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 RNF115Q9Y4L5 304 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 IER3IP1Q9Y5U9 82 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 C2CD3Q4AC94 2353 aa11.11□□□□□ -0.63
PNKP-217ENST00000625216 ZFHX3Q15911 3703 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 CIB4A0PJX0 185 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 C11orf98E9PRG8 122 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 PLPP3O14495 311 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 MPZL2O60487 215 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 FAM20BO75063 409 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 PLAUP00749 431 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 HIST1H2ABP04908 130 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 HMGN1P05114 100 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 F13BP05160 661 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 CD14P08571 375 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 CRHBPP24387 322 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 EDNRAP25101 427 aa11.1□□□□□ -0.63
PNKP-217ENST00000625216 RPL4P36578 427 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms