RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 ACSM5Q6NUN0 579 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 SLC16A14Q7RTX9 510 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 OR1J2Q8NGS2 313 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 VANGL1Q8TAA9 524 aaPredicted RBP21.26■□□□□ 0.99
PTPRF-216ENST00000617451 MCHR2Q969V1 340 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 BCL2L14Q9BZR8 327 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 PCDHAC1Q9H158 963 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 ZNF665Q9H7R5 613 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 LEF1Q9UJU2 399 aaPredicted RBP21.26■□□□□ 0.99
PTPRF-216ENST00000617451 PCDHB10Q9UN67 800 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 TRIM33Q9UPN9 1127 aa21.26■□□□□ 0.99
PTPRF-216ENST00000617451 DYSFO75923 2080 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 RGS9O75916 674 aaPredicted RBP21.25■□□□□ 0.99
PTPRF-216ENST00000617451 AVPP01185 164 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 CD247P20963 164 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 MTPNP58546 118 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 MVKQ03426 396 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 SELPLGQ14242 412 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 AVPI1Q5T686 147 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 USP43Q70EL4 1123 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 DHDDSQ86SQ9 333 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 DPP10Q8N608 796 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 TEX29Q8N6K0 151 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 ZNF347Q96SE7 839 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 SEPHS2Q99611 448 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 MRPL13Q9BYD1 178 aaKnown RBP21.25■□□□□ 0.99
PTPRF-216ENST00000617451 LRMDAQ9H2I8 198 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 RABEP2Q9H5N1 569 aa21.25■□□□□ 0.99
PTPRF-216ENST00000617451 WNK2Q9Y3S1 2297 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 MMP7P09237 267 aaPredicted RBP21.24■□□□□ 0.99
PTPRF-216ENST00000617451 UMPSP11172 480 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 EPHA1P21709 976 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 CLRN1P58418 232 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 HILS1P60008 231 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 TEKQ02763 1124 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 PLP2Q04941 152 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 NANOGNBQ7Z5D8 188 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 PATL1Q86TB9 770 aaKnown RBP21.24■□□□□ 0.99
PTPRF-216ENST00000617451 RBM15BQ8NDT2 890 aaKnown RBP21.24■□□□□ 0.99
PTPRF-216ENST00000617451 FAM216AQ8WUB2 273 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 CGREF1Q99674 301 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 PRSS27Q9BQR3 290 aa21.24■□□□□ 0.99
PTPRF-216ENST00000617451 MEPEQ9NQ76 525 aaPredicted RBP21.24■□□□□ 0.99
PTPRF-216ENST00000617451 LOC105371242A0A075B767 164 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 IGHV1-69-2A0A0G2JMI3 117 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 IQCMA0A1B0GVH7 501 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 BLOC1S5-TXNDC5H3BN57 136 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 PLPP2O43688 288 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 DEAF1O75398 565 aaPredicted RBP21.23■□□□□ 0.99
PTPRF-216ENST00000617451 MPZL1O95297 269 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 ZNF84P51523 738 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 ACTG1P63261 375 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 MOGQ16653 247 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 BEND6Q5SZJ8 279 aaPredicted RBP21.23■□□□□ 0.99
PTPRF-216ENST00000617451 RETREG3Q86VR2 466 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 SLC30A8Q8IWU4 369 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 TAMM41Q96BW9 452 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 RAB39BQ96DA2 213 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 KAT8Q9H7Z6 458 aaKnown RBP21.23■□□□□ 0.99
PTPRF-216ENST00000617451 NDUFAF1Q9Y375 327 aa21.23■□□□□ 0.99
PTPRF-216ENST00000617451 CENPBD1B2RD01 187 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 MGRN1O60291 552 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 IGHV3-13P01766 116 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 ARFIP2P53365 341 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 AGBL2Q5U5Z8 902 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 USP51Q70EK9 711 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 PEG10Q86TG7 708 aaKnown RBP21.22■□□□□ 0.99
PTPRF-216ENST00000617451 LRRC18Q8N456 261 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 SYT14Q8NB59 555 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 ICA1LQ8NDH6 482 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 NOXO1Q8NFA2 376 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 GTF3AQ92664 365 aaKnown RBP21.22■□□□□ 0.99
PTPRF-216ENST00000617451 TMPRSS13Q9BYE2 586 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 DECR2Q9NUI1 292 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 MGAM2Q2M2H8 2515 aa21.22■□□□□ 0.99
PTPRF-216ENST00000617451 A0A1W2PRG6 482 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 TMEM89A2RUT3 159 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 MT-ND5P03915 603 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 F13BP05160 661 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 PCGF2P35227 344 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 APLNRP35414 380 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 ZNF133P52736 654 aaPredicted RBP21.21■□□□□ 0.99
PTPRF-216ENST00000617451 UGT2B15P54855 530 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 RPL18Q07020 188 aaKnown RBP21.21■□□□□ 0.99
PTPRF-216ENST00000617451 C10orf128Q5T292 105 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 CPEB3Q8NE35 698 aaKnown RBP21.21■□□□□ 0.99
PTPRF-216ENST00000617451 OR1J1Q8NGS3 322 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 ASB10Q8WXI3 467 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 GCDHQ92947 438 aaPredicted RBP21.21■□□□□ 0.99
PTPRF-216ENST00000617451 WIPI2Q9Y4P8 454 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 CACNG2Q9Y698 323 aa21.21■□□□□ 0.99
PTPRF-216ENST00000617451 A0A0G2JMP0 313 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 A0A0X1KG70 313 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 CLDN25C9JDP6 229 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 MCIDASD6RGH6 385 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 TRIM77I1YAP6 450 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 TPD52L2O43399 206 aaKnown RBP21.2■□□□□ 0.98
PTPRF-216ENST00000617451 TRMUO75648 421 aaKnown RBP21.2■□□□□ 0.98
PTPRF-216ENST00000617451 IGHV2-5P01817 119 aa21.2■□□□□ 0.98
PTPRF-216ENST00000617451 ACADSP16219 412 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms