RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 OR8G3PP0DMU2 310 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 ZNF26P17031 533 aaPredicted RBP14.06□□□□□ -0.16
LSM4-206ENST00000600289 HOXB6P17509 224 aaKnown RBP14.06□□□□□ -0.16
LSM4-206ENST00000600289 RRM2P31350 389 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 TUBA1BP68363 451 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 TUBA4AP68366 448 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 NAAAQ02083 359 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 BNIP1Q12981 228 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 GSG1Q2KHT4 349 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 PRSS57Q6UWY2 283 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 CLEC9AQ6UXN8 241 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 TUBA1AQ71U36 451 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 FAM122BQ7Z309 247 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 MDP1Q86V88 176 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 SLC22A24Q8N4F4 322 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 LINC00471Q8N535 108 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 OR52J3Q8NH60 311 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 RSRC1Q96IZ7 334 aaKnown RBP14.06□□□□□ -0.16
LSM4-206ENST00000600289 CLPTM1LQ96KA5 538 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 C18orf12Q96KH6 178 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 ZNF75AQ96N20 296 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 BTBD10Q9BSF8 475 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 THTPAQ9BU02 230 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 ZNF346Q9UL40 294 aaKnown RBP14.06□□□□□ -0.16
LSM4-206ENST00000600289 AURKCQ9UQB9 309 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 LAMP3Q9UQV4 416 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 ZANQ9Y493 2812 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 AQP12BA6NM10 295 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 ATP6V1G2-DDX39BF2Z307 99 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 GYG2O15488 501 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 FPR3P25089 353 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 TTKP33981 857 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 ACVR1BP36896 505 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 IFNGR2P38484 337 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 PTH2RP49190 550 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 ZNF84P51523 738 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 NKX6-1P78426 367 aaPredicted RBP14.05□□□□□ -0.16
LSM4-206ENST00000600289 MRPS34P82930 218 aaKnown RBP14.05□□□□□ -0.16
LSM4-206ENST00000600289 FAM98BQ52LJ0 330 aaKnown RBP14.05□□□□□ -0.16
LSM4-206ENST00000600289 THEM4Q5T1C6 240 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 AGAP6Q5VW22 663 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 C1orf94Q6P1W5 598 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 ZER1Q7Z7L7 766 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 AQP12AQ8IXF9 295 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 ARIH2OSQ8N7S6 290 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 SYT14Q8NB59 555 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 WFDC11Q8NEX6 87 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 TRIM15Q9C019 465 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 NOX3Q9HBY0 568 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 NRIP3Q9NQ35 241 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 POU2F3Q9UKI9 436 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 TMCC3Q9ULS5 477 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 UGT2A1Q9Y4X1 527 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 LYVE1Q9Y5Y7 322 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 CUBNO60494 3623 aa14.05□□□□□ -0.16
LSM4-206ENST00000600289 TLN2Q9Y4G6 2542 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 UNC119BA6NIH7 251 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 ARHGEF9O43307 516 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 FARS2O95363 451 aaKnown RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 STAMBPO95630 424 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 CD8AP01732 235 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 HLA-HP01893 362 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 INHBBP09529 407 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 APEHP13798 732 aaKnown RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 ZNF14P17017 642 aaPredicted RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 NPR2P20594 1047 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 FXYD6P3P58550 94 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 CHRNB3Q05901 458 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 TOP3AQ13472 1001 aaPredicted RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 GK3PQ14409 553 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 GPR139Q6DWJ6 353 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 C11orf71Q6IPW1 123 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 SLC25A47Q6Q0C1 308 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 FOXL2NBQ6ZUU3 175 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 MYPOPQ86VE0 399 aaPredicted RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 IGFN1Q86VF2 1251 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 SKA3Q8IX90 412 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 NUP37Q8NFH4 326 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 OR4F15Q8NGB8 312 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 OR4C15Q8NGM1 316 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 CCDC124Q96CT7 223 aaKnown RBP14.04□□□□□ -0.16
LSM4-206ENST00000600289 LRGUKQ96M69 825 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 GPA33Q99795 319 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 KCNS3Q9BQ31 491 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 SEC61A2Q9H9S3 476 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 GRHPRQ9UBQ7 328 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 MOKQ9UQ07 419 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 ATP23Q9Y6H3 246 aa14.04□□□□□ -0.16
LSM4-206ENST00000600289 OR10H3O60404 316 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 DNAJC8O75937 253 aaPredicted RBP14.03□□□□□ -0.16
LSM4-206ENST00000600289 ATP5HO75947 161 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 SLC2A10O95528 541 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 TXNDC12O95881 172 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 CELA3BP08861 270 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 RAP2AP10114 183 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 CALCRP30988 508 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 SDHAP31040 664 aa14.03□□□□□ -0.16
LSM4-206ENST00000600289 APOBEC3AP31941 199 aaPredicted RBP14.03□□□□□ -0.16
LSM4-206ENST00000600289 RPL4P36578 427 aaKnown RBP14.03□□□□□ -0.16
LSM4-206ENST00000600289 CAPZA2P47755 286 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms