RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CSNK2A1P68400 391 aaPredicted RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 EFNB1P98172 346 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 POU3F1Q03052 451 aaPredicted RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.2□□□□□ -0.62
UPF1-208ENST00000600012 FAM27E3Q08E93 113 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 ZP4Q12836 540 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CRMP1Q14194 572 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 ACKR1Q16570 336 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 RBM48Q5RL73 367 aaKnown RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 TMEM201Q5SNT2 666 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 VWA1Q6PCB0 445 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 PAQR6Q6TCH4 344 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 PRSS57Q6UWY2 283 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CXXC5Q7LFL8 322 aaKnown RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 CPOQ8IVL8 374 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 MEIOBQ8N635 442 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CNEP1R1Q8N9A8 125 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CYB561A3Q8NBI2 242 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 SLC37A3Q8NCC5 494 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 BBS1Q8NFJ9 593 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 OR52E2Q8NGJ4 325 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 OR4K13Q8NH42 304 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 OR10D3Q8NH80 312 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 TRUB1Q8WWH5 349 aaKnown RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 SGCDQ92629 289 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 OTULINQ96BN8 352 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 STARD4Q96DR4 205 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 ZNF845Q96IR2 970 aaPredicted RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 LRR1Q96L50 414 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 WFIKKN1Q96NZ8 548 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 MED18Q9BUE0 208 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 FN3KQ9H479 309 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CLN6Q9NWW5 311 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 KLHL13Q9P2N7 655 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 ZNF346Q9UL40 294 aaKnown RBP11.2□□□□□ -0.62
UPF1-208ENST00000600012 B3GALT5Q9Y2C3 310 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 CSPG4Q6UVK1 2322 aa11.2□□□□□ -0.62
UPF1-208ENST00000600012 H7C1C5 153 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 SMAD9O15198 467 aaKnown RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 LY6G6DO95868 133 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 IFNGP01579 166 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 IGHMP01871 453 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 APEHP13798 732 aaKnown RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZNF3P17036 446 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 CRHBPP24387 322 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 SDHAP31040 664 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 CDH15P55291 814 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 CARD18P57730 90 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 RAC3P60763 192 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 LCN6P62502 163 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 TEKQ02763 1124 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 KRR1Q13601 381 aaKnown RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZNF239Q16600 458 aaKnown RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 MESTQ5EB52 335 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZNF362Q5T0B9 420 aaPredicted RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 PDSS1Q5T2R2 415 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 PLBD1Q6P4A8 553 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 LEG1Q6P5S2 330 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 BTLAQ7Z6A9 289 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 GPAT4Q86UL3 456 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 UEVLDQ8IX04 471 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ANKK1Q8NFD2 765 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZHX1-C8orf76Q96EF9 292 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 PIK3IP1Q96FE7 263 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZNF582Q96NG8 517 aaPredicted RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 CCL19Q99731 98 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 NAA11Q9BSU3 229 aaPredicted RBP11.19□□□□□ -0.62
UPF1-208ENST00000600012 HCAR1Q9BXC0 346 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 TXNIPQ9H3M7 391 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ZNF696Q9H7X3 374 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 AMBNQ9NP70 447 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 ELOVL5Q9NYP7 299 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 B3GAT1Q9P2W7 334 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 KLHL21Q9UJP4 597 aa11.19□□□□□ -0.62
UPF1-208ENST00000600012 A0A1W2PRG6 482 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 MAGEA13PA6NCF6 341 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 PRR23D1E9PI22 279 aaPredicted RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 H7C1Q1 480 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 IDH3BO43837 385 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 EIF1BO60739 113 aaKnown RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 TXNDC12O95881 172 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 CCDC159P0C7I6 412 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 SMIM18P0DKX4 95 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 PRR23D2P0DMB1 279 aaPredicted RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 CLUP10909 449 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 IFNGR1P15260 489 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 ENPP1P22413 925 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 CCKARP32238 428 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 UGT2B10P36537 528 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 ACVR1BP36896 505 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 CDKN2AP42771 156 aaKnown RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 KIR2DL2P43627 348 aaPredicted RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 RPL27P61353 136 aaKnown RBP11.18□□□□□ -0.62
UPF1-208ENST00000600012 H3F3AP84243 136 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 PIGFQ07326 219 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 ITGADQ13349 1161 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 OCLNQ16625 522 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 KCTD21Q4G0X4 260 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 AADACL4Q5VUY2 407 aa11.18□□□□□ -0.62
UPF1-208ENST00000600012 GPR139Q6DWJ6 353 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms