RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TMEM202A6NGA9 273 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 GALR2O43603 387 aaPredicted RBP18.77■□□□□ 0.6
UPF1-207ENST00000599848 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.77■□□□□ 0.6
UPF1-207ENST00000599848 ARHGAP11BQ3KRB8 267 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 OR2T35Q8NGX2 323 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 MFFQ9GZY8 342 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 LAMP3Q9UQV4 416 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 C4AP0C0L4 1744 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 MYO9BQ13459 2157 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 SIGLEC1Q9BZZ2 1709 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 TNFRSF10AO00220 468 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 ARPC1BO15143 372 aaKnown RBP18.77■□□□□ 0.6
UPF1-207ENST00000599848 CPEP16870 476 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 DRD5P21918 477 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 FAPQ12884 760 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 ZNF626Q68DY1 528 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 H2BFWTQ7Z2G1 175 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 ADGRE4PQ86SQ3 457 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 EDARADDQ8WWZ3 215 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 LHPPQ9H008 270 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 CPNE5Q9HCH3 593 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 CT45A10P0DMU9 189 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 EVI2BP34910 448 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 DSCR4P56555 118 aaPredicted RBP18.77■□□□□ 0.59
UPF1-207ENST00000599848 FOXK2Q01167 660 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 SMIM21Q3B7S5 101 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 ZNF766Q5HY98 468 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 C9orf50Q5SZB4 431 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 ZNF767PQ75MW2 155 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 LGI3Q8N145 548 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 ZFP90Q8TF47 636 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 ELMOD3Q96FG2 381 aa18.77■□□□□ 0.59
UPF1-207ENST00000599848 MYOZ1Q9NP98 299 aaPredicted RBP18.77■□□□□ 0.59
UPF1-207ENST00000599848 AKR7A3O95154 331 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 GABRA1P14867 456 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 NME1P15531 152 aaKnown RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 HLA-DMAP28067 261 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 GABRA5P31644 462 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 SLC36A1Q7Z2H8 476 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 PRSS35Q8N3Z0 413 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 PGBD5Q8N414 524 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 PATZ1Q9HBE1 687 aaKnown RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 FRG2CA6NGY1 282 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 NPBWR1P48145 328 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 ZNF266Q14584 549 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 HRH3Q9Y5N1 445 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 AGAP14A8MT82 685 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 MBTPS2O43462 519 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 HRO43593 1189 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 POU3F3P20264 500 aaPredicted RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 CCL7P80098 99 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 ILKQ13418 452 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 RBMS2Q15434 407 aaKnown RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 BCORP1Q8N888 145 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 C15orf54Q8N8G6 183 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 COQ10AQ96MF6 247 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 NOX3Q9HBY0 568 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 POMT2Q9UKY4 750 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 K7EQS6 105 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 ZNF701M0R085 212 aaPredicted RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 HTR1FP30939 366 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 HYAL1Q12794 435 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 OVCH1Q7RTY7 1134 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 ZNF740Q8NDX6 193 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 CHST8Q9H2A9 424 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 TCEAL2Q9H3H9 227 aaPredicted RBP18.76■□□□□ 0.59
UPF1-207ENST00000599848 ACKR4Q9NPB9 350 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 COPS3Q9UNS2 423 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 TOPAZ1Q8N9V7 1692 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 PIAS2O75928 621 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 TACR1P25103 407 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 SSTP61278 116 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 OR2L13Q8N349 312 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 GGHQ92820 318 aa18.76■□□□□ 0.59
UPF1-207ENST00000599848 P2RY10O00398 339 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 NDUFB3O43676 98 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 HLA-AP01891 365 aaKnown RBP18.75■□□□□ 0.59
UPF1-207ENST00000599848 NCS1P62166 190 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 ERHP84090 104 aaKnown RBP18.75■□□□□ 0.59
UPF1-207ENST00000599848 TMEM196Q5HYL7 178 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 CST9LP1Q5W188 147 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 GDF7Q7Z4P5 450 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 TSEN54Q7Z6J9 526 aaKnown RBP18.75■□□□□ 0.59
UPF1-207ENST00000599848 TMEM106AQ96A25 262 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 FOXN4Q96NZ1 517 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 FAM234AQ9H0X4 552 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 SMCO4Q9NRQ5 59 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 K7EPK0 472 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 PGGT1BP53609 377 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 ADGRG3Q86Y34 549 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 FAM71E2Q8N5Q1 922 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 WBP2Q969T9 261 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 HES4Q9HCC6 221 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 IGHV3-20A0A0C4DH32 117 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 POM121BA6NF01 834 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 ZDHHC11BP0C7U3 371 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 MEP1BQ16820 701 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 DCXRQ7Z4W1 244 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 LINC01465Q8N7H1 131 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 FAM71CQ8NEG0 241 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms