RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 OR1J1Q8NGS3 322 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 OR5J2Q8NH18 312 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 NANPQ8TBE9 248 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SNX33Q8WV41 574 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 DNAJA4Q8WW22 397 aaPredicted RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 IPCEF1Q8WWN9 437 aaPredicted RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 DVL3Q92997 716 aaPredicted RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF48Q96MX3 618 aaPredicted RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 DCLRE1CQ96SD1 692 aaKnown RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 EPYCQ99645 322 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 MCHR1Q99705 422 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SUCNR1Q9BXA5 334 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF385DQ9H6B1 395 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SAP30LQ9HAJ7 183 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 TMEM27Q9HBJ8 222 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SSU72Q9NP77 194 aaKnown RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC52A3Q9NQ40 469 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 DECR2Q9NUI1 292 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 SELENONQ9NZV5 590 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 VAPAQ9P0L0 249 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF69Q9UC07 566 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF346Q9UL40 294 aaKnown RBP7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 NOTCH3Q9UM47 2321 aa7.33□□□□□ -1.24
SHKBP1-220ENST00000599716 IGKV1D-43A0A0B4J1Z2 117 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 DNAJC9-AS1A6NH13 148 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 TRPC5OSA6NMA1 111 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 OR6A2O95222 327 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC2A10O95528 541 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 FSHBP01225 129 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 F13BP05160 661 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 PGA4P0DJD7 388 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 PGA3P0DJD8 388 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF250P15622 560 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 DRD4P21917 467 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF81P51508 661 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 MRPS11P82912 194 aaKnown RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 FMODQ06828 376 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 FADDQ13158 208 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 SELPLGQ14242 412 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 DUSP7Q16829 419 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 TNFAIP8L3Q5GJ75 292 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 PABPC1L2AQ5JQF8 200 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 KLF17Q5JT82 389 aaPredicted RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 THEM4Q5T1C6 240 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 FAM91A1Q658Y4 838 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 REP15Q6BDI9 236 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 REEP3Q6NUK4 255 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 C5orf46Q6UWT4 87 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC16A14Q7RTX9 510 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 PIWIL3Q7Z3Z3 882 aaKnown RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ARMC8Q8IUR7 673 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 CLDN22Q8N7P3 220 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 GOLGA6L1Q8N7Z2 621 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 RBM15BQ8NDT2 890 aaKnown RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 OR6T1Q8NGN1 323 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 AKR7LQ8NHP1 331 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF519Q8TB69 540 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 C11orf40Q8WZ69 217 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC35B4Q969S0 331 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF566Q969W8 418 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 RAB39BQ96DA2 213 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF747Q9BV97 191 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 MSL2Q9HCI7 577 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 NPHS2Q9NP85 383 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 DDX28Q9NUL7 540 aaKnown RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 THAP1Q9NVV9 213 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 CCDC167Q9P0B6 97 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 TESQ9UGI8 421 aaKnown RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 LEF1Q9UJU2 399 aaPredicted RBP7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 ANGPT4Q9Y264 503 aa7.32□□□□□ -1.24
SHKBP1-220ENST00000599716 TANC2Q9HCD6 1990 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 LOC100509620A0A075B734 347 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MDFIC2A0A1B0GVS7 189 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 BLOC1S5-TXNDC5H3BN57 136 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TRAPPC2LH3BP13 241 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 UBOX5O94941 541 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MFN2O95140 757 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 NGFP01138 241 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MMP7P09237 267 aaPredicted RBP7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SBK2P0C263 348 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 HKR1P10072 659 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 UMPSP11172 480 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 ANPEPP15144 967 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 FUT1P19526 365 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TNFRSF1BP20333 461 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 OMGP23515 440 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 LIMS1P48059 325 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MMP15P51511 669 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 CLRN1P58418 232 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 ERVK-25P63136 954 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 HSF2Q03933 536 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SCGB2A2Q13296 93 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF74Q16587 644 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TBC1D28Q2M2D7 210 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 HFEQ30201 348 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 ENTPD8Q5MY95 495 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 OTPQ5XKR4 325 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TMEM53Q6P2H8 277 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MSANTD1Q6ZTZ1 278 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 RFPL4BQ6ZWI9 263 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms