RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 POU2F3Q9UKI9 436 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF346Q9UL40 294 aaKnown RBP14□□□□□ -0.17
TRIM28-213ENST00000598355 ZANQ9Y493 2812 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 CR1P17927 2039 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 SLC2A10O95528 541 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 RRM2P31350 389 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 MYBPC1Q00872 1141 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 HGFACQ04756 655 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 FMODQ06828 376 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 TOP3AQ13472 1001 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-213ENST00000598355 PGM2L1Q6PCE3 622 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 THSD4Q6ZMP0 1018 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 DPPA2Q7Z7J5 298 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 ZER1Q7Z7L7 766 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 DHFR2Q86XF0 187 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF584Q8IVC4 421 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 MUC15Q8N387 334 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 ARIH2OSQ8N7S6 290 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 SYT14Q8NB59 555 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 IL17RDQ8NFM7 739 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 OR4F15Q8NGB8 312 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 RSRC1Q96IZ7 334 aaKnown RBP13.99□□□□□ -0.17
TRIM28-213ENST00000598355 CLPTM1LQ96KA5 538 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF442Q9H7R0 627 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 KRCC1Q9NPI7 259 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-213ENST00000598355 NRIP3Q9NQ35 241 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 FBXL3Q9UKT7 428 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 ADAM18Q9Y3Q7 739 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 LYVE1Q9Y5Y7 322 aa13.99□□□□□ -0.17
TRIM28-213ENST00000598355 A6NIZ1 184 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 H7C417 338 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 NDUFB2O95178 105 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 MMP7P09237 267 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-213ENST00000598355 CD99P14209 185 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 FOSL1P15407 271 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 FPR3P25089 353 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 APOBEC3AP31941 199 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-213ENST00000598355 ACVR1BP36896 505 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 CDKN1AP38936 164 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 GSSP48637 474 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF84P51523 738 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 RAP1BP61224 184 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 RAP1AP62834 184 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 TRAP1Q12931 704 aaKnown RBP13.98□□□□□ -0.17
TRIM28-213ENST00000598355 ETFDHQ16134 617 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 DNAL1Q4LDG9 190 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 MESTQ5EB52 335 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 THEM4Q5T1C6 240 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 DNM1P46Q6ZS02 220 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 YTHDF3Q7Z739 585 aaKnown RBP13.98□□□□□ -0.17
TRIM28-213ENST00000598355 FBXL14Q8N1E6 418 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 CLDN22Q8N7P3 220 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 OR4C15Q8NGM1 316 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 OR52J3Q8NH60 311 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 MS4A3Q96HJ5 214 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 KCNS3Q9BQ31 491 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 CA10Q9NS85 328 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 ATP23Q9Y6H3 246 aa13.98□□□□□ -0.17
TRIM28-213ENST00000598355 AHCYL1O43865 530 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 KRT36O76013 467 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 FARS2O95363 451 aaKnown RBP13.97□□□□□ -0.17
TRIM28-213ENST00000598355 TXNDC12O95881 172 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 CD79AP11912 226 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF35P13682 527 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 APEHP13798 732 aaKnown RBP13.97□□□□□ -0.17
TRIM28-213ENST00000598355 SDHAP31040 664 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 CAPZA2P47755 286 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 GIPRP48546 466 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 FABP6P51161 128 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 ATP5J2P56134 94 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 RAB1AP62820 205 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 CD47Q08722 323 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 NPRL3Q12980 569 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 EFNB3Q15768 340 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 ADIPOQQ15848 244 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 SWI5Q1ZZU3 235 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 MST1LQ2TV78 715 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 GPR139Q6DWJ6 353 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 C1orf94Q6P1W5 598 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 HTRA1Q92743 480 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 CCDC124Q96CT7 223 aaKnown RBP13.97□□□□□ -0.17
TRIM28-213ENST00000598355 Q96M85 177 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 SH3GL3Q99963 347 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 TRIM15Q9C019 465 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 NDEL1Q9GZM8 345 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 TLN2Q9Y4G6 2542 aa13.97□□□□□ -0.17
TRIM28-213ENST00000598355 SLC22A23A1A5C7 686 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 UNC119BA6NIH7 251 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 RAB36O95755 333 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 IGHV4-39P01824 125 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 SERPINA5P05154 406 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 NPR2P20594 1047 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 PTDSS1P48651 473 aaKnown RBP13.96□□□□□ -0.17
TRIM28-213ENST00000598355 ERVK-25P63136 954 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 BNIP1Q12981 228 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF770Q6IQ21 691 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-213ENST00000598355 PGBD2Q6P3X8 592 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 DPY19L2P2Q6ZN68 376 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 ADGRG5Q8IZF4 528 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 TRMT61AQ96FX7 289 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms