RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ARHGEF9O43307 516 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SMPD2O60906 423 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 UBL3O95164 117 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 FARS2O95363 451 aaKnown RBP12.66□□□□□ -0.38
VRK3-206ENST00000594090 DANCRP0C864 163 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 OR8G3PP0DMU2 310 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SDHAP31040 664 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 ARR3P36575 388 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 PPP1R8Q12972 351 aaKnown RBP12.66□□□□□ -0.38
VRK3-206ENST00000594090 TSPAN31Q12999 210 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 KRR1Q13601 381 aaKnown RBP12.66□□□□□ -0.38
VRK3-206ENST00000594090 NRN1LQ496H8 165 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 THEM4Q5T1C6 240 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SLC25A47Q6Q0C1 308 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SMARCD3Q6STE5 483 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SPNS3Q6ZMD2 512 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SPATA24Q86W54 205 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SKA3Q8IX90 412 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 LINC00471Q8N535 108 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 OR9Q2Q8NGE9 314 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 GNPDA2Q8TDQ7 276 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 TMEM171Q8WVE6 324 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 KCNS3Q9BQ31 491 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 CHID1Q9BWS9 393 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 OR52D1Q9H346 318 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 REEP1Q9H902 201 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 NRIP3Q9NQ35 241 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 LAMP3Q9UQV4 416 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 SAMHD1Q9Y3Z3 626 aaKnown RBP12.66□□□□□ -0.38
VRK3-206ENST00000594090 UGT2A1Q9Y4X1 527 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 U3KQV3 271 aa12.66□□□□□ -0.38
VRK3-206ENST00000594090 CADP27708 2225 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 TEX13CA0A0J9YWL9 993 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 TCRBV3S1A0A5B6 114 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 H7C1C5 153 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 XKRYO14609 159 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 TMCC2O75069 709 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 CRYAAP02489 173 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 HOXB6P17509 224 aaKnown RBP12.65□□□□□ -0.38
VRK3-206ENST00000594090 CALCRP30988 508 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 PTDSS1P48651 473 aaKnown RBP12.65□□□□□ -0.38
VRK3-206ENST00000594090 LCN6P62502 163 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 PIGFQ07326 219 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 GPR139Q6DWJ6 353 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 ZNF770Q6IQ21 691 aaPredicted RBP12.65□□□□□ -0.38
VRK3-206ENST00000594090 DPY19L2P2Q6ZN68 376 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 DTX2Q86UW9 622 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 LRRC75A-AS1Q8N1F1 130 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 FGFBP3Q8TAT2 258 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 NSMAFQ92636 917 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 RASD2Q96D21 266 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 ZNF75AQ96N20 296 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 RBP7Q96R05 134 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 SH3GL3Q99963 347 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 DHRS9Q9BPW9 319 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 LRMDAQ9H2I8 198 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 FAIMQ9NVQ4 179 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 ATP23Q9Y6H3 246 aa12.65□□□□□ -0.38
VRK3-206ENST00000594090 PRSS37A4D1T9 235 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 CCNB2O95067 398 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 RAB36O95755 333 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 CST1P01037 141 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 PATE4P0C8F1 98 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 ZNF14P17017 642 aaPredicted RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 CDAP32320 146 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 GIPRP48546 466 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 RPS6KA3P51812 740 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 RAB1AP62820 205 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 MRPS34P82930 218 aaKnown RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 RFX4Q33E94 735 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 ZNF620Q6ZNG0 422 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 NABP1Q96AH0 204 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 MS4A3Q96HJ5 214 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 TRAF4Q9BUZ4 470 aaPredicted RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 MMADHCQ9H3L0 296 aaPredicted RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 CXorf56Q9H5V9 222 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 DENND2DQ9H6A0 471 aaPredicted RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 IER3IP1Q9Y5U9 82 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 CREBBPQ92793 2442 aa12.64□□□□□ -0.39
VRK3-206ENST00000594090 PRRC2AP48634 2157 aaKnown RBP12.64□□□□□ -0.39
VRK3-206ENST00000594090 IGHV2OR16-5A0A0B4J2B6 119 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SLC22A23A1A5C7 686 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SOCS2O14508 198 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 AHCYL1O43865 530 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 MGRN1O60291 552 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 PPP1R3DO95685 299 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 TXNDC12O95881 172 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 APEHP13798 732 aaKnown RBP12.63□□□□□ -0.39
VRK3-206ENST00000594090 NPR2P20594 1047 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SLC6A6P31641 620 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 TTKP33981 857 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 ERFP50548 548 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 FABP6P51161 128 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 GK3PQ14409 553 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SLC36A2Q495M3 483 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 AGAP6Q5VW22 663 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 ZNF544Q6NX49 715 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 FOXL2NBQ6ZUU3 175 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SLC16A14Q7RTX9 510 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 DPPA2Q7Z7J5 298 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms