RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF418Q8TF45 676 aaPredicted RBP17.98■□□□□ 0.47
VPS53-216ENST00000574029 FAHD2AQ96GK7 314 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 MPP4Q96JB8 637 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 SLC19A3Q9BZV2 496 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 ZNF665Q9H7R5 613 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 SLC7A7Q9UM01 511 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 TRAPPC13A5PLN9 417 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 BCL10O95999 233 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 PTHP01270 115 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 HIST1H2ABP04908 130 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 LCKP06239 509 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 CD247P20963 164 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 MDH1P40925 334 aaKnown RBP17.97■□□□□ 0.47
VPS53-216ENST00000574029 RAD52P43351 418 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 UCP2P55851 309 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 GUCY1A3Q02108 690 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 SELPLGQ14242 412 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 CYP51A1Q16850 503 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 TBC1D28Q2M2D7 210 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 ACSM5Q6NUN0 579 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 THSD4Q6ZMP0 1018 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 USP43Q70EL4 1123 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 HIST3H2AQ7L7L0 130 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 SLC16A14Q7RTX9 510 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 VANGL1Q8TAA9 524 aaPredicted RBP17.97■□□□□ 0.47
VPS53-216ENST00000574029 SNX33Q8WV41 574 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 C11orf40Q8WZ69 217 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 HIST1H2ACQ93077 130 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 MCHR2Q969V1 340 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 SEPHS2Q99611 448 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 BCL2L14Q9BZR8 327 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 PCDHAC1Q9H158 963 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 OR51B6Q9H340 312 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 NPHS2Q9NP85 383 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 LEF1Q9UJU2 399 aaPredicted RBP17.97■□□□□ 0.47
VPS53-216ENST00000574029 PCDHB10Q9UN67 800 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 TRIM33Q9UPN9 1127 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 DYSFO75923 2080 aa17.97■□□□□ 0.47
VPS53-216ENST00000574029 KPNA4O00629 521 aaPredicted RBP17.96■□□□□ 0.47
VPS53-216ENST00000574029 DEAF1O75398 565 aaPredicted RBP17.96■□□□□ 0.47
VPS53-216ENST00000574029 AVPP01185 164 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 IGHG1P01857 330 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 CLRN1P58418 232 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 HILS1P60008 231 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 TEKQ02763 1124 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 MVKQ03426 396 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 AVPI1Q5T686 147 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 METTL21CQ5VZV1 264 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 DHDDSQ86SQ9 333 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 DPP10Q8N608 796 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 FAM216AQ8WUB2 273 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 THOC1Q96FV9 657 aaKnown RBP17.96■□□□□ 0.47
VPS53-216ENST00000574029 ZNF347Q96SE7 839 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 PRSS27Q9BQR3 290 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 MRPL13Q9BYD1 178 aaKnown RBP17.96■□□□□ 0.47
VPS53-216ENST00000574029 LRMDAQ9H2I8 198 aa17.96■□□□□ 0.47
VPS53-216ENST00000574029 IGHV1-69-2A0A0G2JMI3 117 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 IQCMA0A1B0GVH7 501 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 TMEM89A2RUT3 159 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 DYNC1I1O14576 645 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 MGRN1O60291 552 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 MPZL1O95297 269 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 MMP7P09237 267 aaPredicted RBP17.95■□□□□ 0.46
VPS53-216ENST00000574029 UMPSP11172 480 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 EPHA1P21709 976 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 ZNF84P51523 738 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 ZNF133P52736 654 aaPredicted RBP17.95■□□□□ 0.46
VPS53-216ENST00000574029 ARFIP2P53365 341 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 MTPNP58546 118 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 PLP2Q04941 152 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 NANOGNBQ7Z5D8 188 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 PATL1Q86TB9 770 aaKnown RBP17.95■□□□□ 0.46
VPS53-216ENST00000574029 SLC30A8Q8IWU4 369 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 RBM15BQ8NDT2 890 aaKnown RBP17.95■□□□□ 0.46
VPS53-216ENST00000574029 TAMM41Q96BW9 452 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 CGREF1Q99674 301 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 TMPRSS13Q9BYE2 586 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 RABEP2Q9H5N1 569 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 MEPEQ9NQ76 525 aaPredicted RBP17.95■□□□□ 0.46
VPS53-216ENST00000574029 NDUFAF1Q9Y375 327 aa17.95■□□□□ 0.46
VPS53-216ENST00000574029 LOC105371242A0A075B767 164 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 CENPBD1B2RD01 187 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 PLPP2O43688 288 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 RGS9O75916 674 aaPredicted RBP17.94■□□□□ 0.46
VPS53-216ENST00000574029 IGHV3-13P01766 116 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 ACTG1P63261 375 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 MOGQ16653 247 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 USP51Q70EK9 711 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 PEG10Q86TG7 708 aaKnown RBP17.94■□□□□ 0.46
VPS53-216ENST00000574029 RETREG3Q86VR2 466 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 NOXO1Q8NFA2 376 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 GTF3AQ92664 365 aaKnown RBP17.94■□□□□ 0.46
VPS53-216ENST00000574029 RAB39BQ96DA2 213 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 KAT8Q9H7Z6 458 aaKnown RBP17.94■□□□□ 0.46
VPS53-216ENST00000574029 FGFR1OP2Q9NVK5 253 aa17.94■□□□□ 0.46
VPS53-216ENST00000574029 A0A0G2JND7 137 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 BLOC1S5-TXNDC5H3BN57 136 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 TRIM77I1YAP6 450 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 IGHV2-5P01817 119 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 VIMP08670 466 aaKnown RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms