RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FXNQ16595 210 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 TRIM16LQ309B1 348 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 IQCCQ4KMZ1 466 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 ALG10BQ5I7T1 473 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 KRT80Q6KB66 452 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 C16orf89Q6UX73 402 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 DLEU7Q6UYE1 221 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 LINC00114Q6XXX2 140 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 H1FNTQ75WM6 255 aaPredicted RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 LRP11Q86VZ4 500 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 ZNF584Q8IVC4 421 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 TSPAN14Q8NG11 270 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 OR4D11Q8NGI4 311 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 OR6S1Q8NH40 331 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 UBASH3BQ8TF42 649 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NRG4Q8WWG1 115 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NEU4Q8WWR8 484 aaPredicted RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 MRPL24Q96A35 216 aaKnown RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 MED30Q96HR3 178 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 LRR1Q96L50 414 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 KCNS3Q9BQ31 491 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 EBF4Q9BQW3 602 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 THTPAQ9BU02 230 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 RAB1BQ9H0U4 201 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 TPK1Q9H3S4 243 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 RMND5AQ9H871 391 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 HMG20AQ9NP66 347 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 SLCO1B3Q9NPD5 702 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 THUMPD1Q9NXG2 353 aaKnown RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 MRPL39Q9NYK5 338 aaKnown RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 IL20Q9NYY1 176 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 MYEF2Q9P2K5 600 aaKnown RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 PRELID1Q9Y255 219 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 MYRFQ9Y2G1 1151 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 MGAM2Q2M2H8 2515 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 EVPLLA8MZ36 301 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 FAM157AC9JC47 383 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 M0R3G1 203 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PLPP3O14495 311 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 NCR1O76036 304 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 MFN2O95140 757 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ADRA2AP08913 450 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PATE4P0C8F1 98 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 B4GALT1P15291 398 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 GPX2P18283 190 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 APEX1P27695 318 aaKnown RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 GLRXP35754 106 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 SERPINB10P48595 397 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 EVX1P49640 407 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 IDH3AP50213 366 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CRYBA2P53672 197 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CDH12P55289 794 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PCBP3P57721 371 aaKnown RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 CDK6Q00534 326 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PIGFQ07326 219 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 NPRL3Q12980 569 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CAMK2DQ13557 499 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 DAG1Q14118 895 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 SELPLGQ14242 412 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ZNF846Q147U1 533 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 MFSD13AQ14CX5 517 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 DUSP7Q16829 419 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ZBED5Q49AG3 693 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 KCTD21Q4G0X4 260 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 GCNT6Q5T4J0 391 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 OGFRL1Q5TC84 451 aaPredicted RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 SLX4IPQ5VYV7 408 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CARD17Q5XLA6 110 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CGB2Q6NT52 195 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 REEP3Q6NUK4 255 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ULK3Q6PHR2 472 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 C5orf46Q6UWT4 87 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ZNF813Q6ZN06 617 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PTOV1Q86YD1 416 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 TREML1Q86YW5 311 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 UEVLDQ8IX04 471 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 GPR137CQ8N3F9 429 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PAQR4Q8N4S7 273 aaPredicted RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 LINC01356Q8N9X3 169 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ZNF540Q8NDQ6 660 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 PIK3C3Q8NEB9 887 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 GPR32P1Q8NGA4 272 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 GRPEL2Q8TAA5 225 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 SLC26A7Q8TE54 656 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 DNAJA4Q8WW22 397 aaPredicted RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 HPS1Q92902 700 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 YIPF5Q969M3 257 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 SNX18Q96RF0 628 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 BCL7BQ9BQE9 202 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 CPPED1Q9BRF8 314 aaPredicted RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 TMEM120AQ9BXJ8 343 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 RBM38Q9H0Z9 239 aaKnown RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 TMEM38AQ9H6F2 299 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 ARMC1Q9NVT9 282 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 TAS2R5Q9NYW4 299 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 TESQ9UGI8 421 aaKnown RBP5.77□□□□□ -1.49
VPS53-213ENST00000572334 USP22Q9UPT9 525 aa5.77□□□□□ -1.49
VPS53-213ENST00000572334 M0R3H8 397 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 SYNGR3O43761 229 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RP2O75695 350 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms