RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TSPAN15O95858 294 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 CSF1P09603 554 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 TFPTP0C1Z6 253 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 NR2F1P10589 423 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 B4GALT1P15291 398 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 SELEP16581 610 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 NCF2P19878 526 aaPredicted RBP9.38□□□□□ -0.91
VPS53-207ENST00000570510 MDH1P40925 334 aaKnown RBP9.38□□□□□ -0.91
VPS53-207ENST00000570510 NME5P56597 212 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 DSTNP60981 165 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 RAB39AQ14964 217 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 LARS2Q15031 903 aaKnown RBP9.38□□□□□ -0.91
VPS53-207ENST00000570510 RGNQ15493 299 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 TUSC1Q2TAM9 212 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 LIN52Q52LA3 116 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 RNF220Q5VTB9 566 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 BTNL3Q6UXE8 466 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 CLEC4FQ8N1N0 589 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 SPICQ8N5J4 248 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 ZG16BQ96DA0 208 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 KTI12Q96EK9 354 aaPredicted RBP9.38□□□□□ -0.91
VPS53-207ENST00000570510 OXGR1Q96P68 337 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 SPATA5L1Q9BVQ7 753 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 CDH20Q9HBT6 801 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 CCDC167Q9P0B6 97 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 NDUFAF1Q9Y375 327 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 TRBV5-3A0A0A0MS03 114 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 G3V4G9 280 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 FRS3O43559 492 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 SPRY3O43610 288 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 NDUFA7O95182 113 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 OR8G3PP0DMU2 310 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 PNMTP11086 282 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 ZNF12P17014 697 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 MAKP20794 623 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 CDKN2CP42773 168 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 CRATP43155 626 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 ZNF81P51508 661 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 P2RY4P51582 365 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 LOXL3P58215 753 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 GLO1Q04760 184 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 FUT5Q11128 374 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 EPS8Q12929 822 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 AGKQ53H12 422 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 ESCO2Q56NI9 601 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 FAM209AQ5JX71 171 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 FAM205BPQ63HN1 556 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 WBP2NLQ6ICG8 309 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 LSRQ86X29 649 aaPredicted RBP9.37□□□□□ -0.91
VPS53-207ENST00000570510 KRT73Q86Y46 540 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 OR9I1Q8NGQ6 314 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 OR6N1Q8NGY5 312 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 BBS10Q8TAM1 723 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 ZNF519Q8TB69 540 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 VPS33AQ96AX1 596 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 SLC47A1Q96FL8 570 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 TSPAN32Q96QS1 320 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 DCLRE1CQ96SD1 692 aaKnown RBP9.37□□□□□ -0.91
VPS53-207ENST00000570510 LRMDAQ9H2I8 198 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 MARCH7Q9H992 704 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 NANOGQ9H9S0 305 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 NPHS2Q9NP85 383 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 C1RLQ9NZP8 487 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 EGFL7Q9UHF1 273 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 INSIG2Q9Y5U4 225 aa9.37□□□□□ -0.91
VPS53-207ENST00000570510 A0A0G2JND7 137 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 MDFIC2A0A1B0GVS7 189 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 PRAMEF27A3QJZ7 478 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 PRORSD1PA6NEY8 169 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 SRRM5B3KS81 715 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 TRAPPC2LH3BP13 241 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ANGPT2O15123 496 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 PIP5K1CO60331 668 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 CCDC22O60826 627 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ENTPD5O75356 428 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 SERPINA5P05154 406 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 VIMP08670 466 aaKnown RBP9.36□□□□□ -0.91
VPS53-207ENST00000570510 IGHV4-38-2P0DP08 117 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ZNF250P15622 560 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 PRKAR1BP31321 381 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 RPS5P46782 204 aaKnown RBP9.36□□□□□ -0.91
VPS53-207ENST00000570510 CYLC2Q14093 348 aaPredicted RBP9.36□□□□□ -0.91
VPS53-207ENST00000570510 BEAN1Q3B7T3 259 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 REEP3Q6NUK4 255 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 C5orf46Q6UWT4 87 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 SLC30A7Q8NEW0 376 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 MFSD8Q8NHS3 518 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 SLC38A5Q8WUX1 472 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ZBTB9Q96C00 473 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 OR2M2Q96R28 347 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ZNF607Q96SK3 696 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 ULBP2Q9BZM5 246 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 BCL2L14Q9BZR8 327 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 RNF121Q9H920 327 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 C12orf10Q9HB07 376 aa9.36□□□□□ -0.91
VPS53-207ENST00000570510 KMT2CQ8NEZ4 4911 aaKnown RBP9.36□□□□□ -0.91
VPS53-207ENST00000570510 IGLV3-9A0A075B6K5 115 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 TRAV40A0A0B4J280 105 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 CDHR4A6H8M9 788 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 ZNF726A6NNF4 738 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms