RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZNF813Q6ZN06 617 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 DPY19L2P2Q6ZN68 376 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 C22orf34Q6ZV56 151 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 WDFY1Q8IWB7 410 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 LRRC75A-AS1Q8N1F1 130 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 FNDC8Q8TC99 324 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 SAMD8Q96LT4 415 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 RBP7Q96R05 134 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ALG12Q9BV10 488 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 IFT27Q9BW83 186 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ZNF556Q9HAH1 456 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ARMC1Q9NVT9 282 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ADAM18Q9Y3Q7 739 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 IER3IP1Q9Y5U9 82 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 MAGED1Q9Y5V3 778 aaPredicted RBP15.1■□□□□ 0.01
CLN3-217ENST00000565354 NBEAL1Q6ZS30 2694 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 TEX13CA0A0J9YWL9 993 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 DHHO43323 396 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ENTPD5O75356 428 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 SEC14L2O76054 403 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 PPP1R3DO95685 299 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 NOS3P29474 1203 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 SDHAP31040 664 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 NR1H2P55055 460 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ACTR3P61158 418 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 PPP2R2BQ00005 443 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ZSCAN26Q16670 478 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 GPR139Q6DWJ6 353 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 KLHL17Q6TDP4 642 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 THSD4Q6ZMP0 1018 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ZNF620Q6ZNG0 422 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ARIH2OSQ8N7S6 290 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 MAGEE2Q8TD90 523 aaPredicted RBP15.09■□□□□ 0.01
CLN3-217ENST00000565354 HDAC2Q92769 488 aaKnown RBP15.09■□□□□ 0.01
CLN3-217ENST00000565354 DUS3LQ96G46 650 aaKnown RBP15.09■□□□□ 0.01
CLN3-217ENST00000565354 Q96M85 177 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ERMAPQ96PL5 475 aaPredicted RBP15.09■□□□□ 0.01
CLN3-217ENST00000565354 GPX7Q96SL4 187 aaPredicted RBP15.09■□□□□ 0.01
CLN3-217ENST00000565354 FOXB1Q99853 325 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 BDH2Q9BUT1 245 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 DGCR6LQ9BY27 220 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 TBC1D23Q9NUY8 699 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 KIF17Q9P2E2 1029 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 CDH10Q9Y6N8 788 aa15.09■□□□□ 0.01
CLN3-217ENST00000565354 ARRDC5A6NEK1 342 aa15.08■□□□□ 0
CLN3-217ENST00000565354 INAFM1C9JVW0 142 aa15.08■□□□□ 0
CLN3-217ENST00000565354 SOCS2O14508 198 aa15.08■□□□□ 0
CLN3-217ENST00000565354 SMPD2O60906 423 aa15.08■□□□□ 0
CLN3-217ENST00000565354 ZNF26P17031 533 aaPredicted RBP15.08■□□□□ 0
CLN3-217ENST00000565354 KRR1Q13601 381 aaKnown RBP15.08■□□□□ 0
CLN3-217ENST00000565354 ATP6AP1Q15904 470 aa15.08■□□□□ 0
CLN3-217ENST00000565354 ZNF770Q6IQ21 691 aaPredicted RBP15.08■□□□□ 0
CLN3-217ENST00000565354 RASSF6Q6ZTQ3 369 aa15.08■□□□□ 0
CLN3-217ENST00000565354 JAZF1Q86VZ6 243 aa15.08■□□□□ 0
CLN3-217ENST00000565354 ATG16L2Q8NAA4 619 aa15.08■□□□□ 0
CLN3-217ENST00000565354 OR5K1Q8NHB7 308 aa15.08■□□□□ 0
CLN3-217ENST00000565354 ZNF519Q8TB69 540 aa15.08■□□□□ 0
CLN3-217ENST00000565354 PYDC1Q8WXC3 89 aa15.08■□□□□ 0
CLN3-217ENST00000565354 NSMAFQ92636 917 aa15.08■□□□□ 0
CLN3-217ENST00000565354 BCL2L2Q92843 193 aaPredicted RBP15.08■□□□□ 0
CLN3-217ENST00000565354 MCHR2Q969V1 340 aa15.08■□□□□ 0
CLN3-217ENST00000565354 RASD2Q96D21 266 aa15.08■□□□□ 0
CLN3-217ENST00000565354 ZNF837Q96EG3 531 aaPredicted RBP15.08■□□□□ 0
CLN3-217ENST00000565354 PLPPR2Q96GM1 343 aa15.08■□□□□ 0
CLN3-217ENST00000565354 Q96MF0 132 aa15.08■□□□□ 0
CLN3-217ENST00000565354 KCNK17Q96T54 332 aa15.08■□□□□ 0
CLN3-217ENST00000565354 FEVQ99581 238 aa15.08■□□□□ 0
CLN3-217ENST00000565354 MRPL13Q9BYD1 178 aaKnown RBP15.08■□□□□ 0
CLN3-217ENST00000565354 ESRP2Q9H6T0 727 aaKnown RBP15.08■□□□□ 0
CLN3-217ENST00000565354 EGLN3Q9H6Z9 239 aa15.08■□□□□ 0
CLN3-217ENST00000565354 OBP2BQ9NPH6 170 aa15.08■□□□□ 0
CLN3-217ENST00000565354 NRIP3Q9NQ35 241 aa15.08■□□□□ 0
CLN3-217ENST00000565354 SLC25A15Q9Y619 301 aa15.08■□□□□ 0
CLN3-217ENST00000565354 DSCAMO60469 2012 aa15.08■□□□□ 0
CLN3-217ENST00000565354 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.07■□□□□ 0
CLN3-217ENST00000565354 H7C1C5 153 aa15.07■□□□□ 0
CLN3-217ENST00000565354 M0R1B8 84 aa15.07■□□□□ 0
CLN3-217ENST00000565354 SMAD7O15105 426 aaKnown RBP15.07■□□□□ 0
CLN3-217ENST00000565354 FARS2O95363 451 aaKnown RBP15.07■□□□□ 0
CLN3-217ENST00000565354 ANXA8P13928 327 aa15.07■□□□□ 0
CLN3-217ENST00000565354 HOXB1P14653 301 aaPredicted RBP15.07■□□□□ 0
CLN3-217ENST00000565354 B4GALT1P15291 398 aa15.07■□□□□ 0
CLN3-217ENST00000565354 GUCA1AP43080 201 aaPredicted RBP15.07■□□□□ 0
CLN3-217ENST00000565354 ZNF83P51522 516 aa15.07■□□□□ 0
CLN3-217ENST00000565354 FXYD6P3P58550 94 aa15.07■□□□□ 0
CLN3-217ENST00000565354 LCN6P62502 163 aa15.07■□□□□ 0
CLN3-217ENST00000565354 CLEC12AQ5QGZ9 265 aa15.07■□□□□ 0
CLN3-217ENST00000565354 THEM4Q5T1C6 240 aa15.07■□□□□ 0
CLN3-217ENST00000565354 C1QTNF12Q5T7M4 302 aa15.07■□□□□ 0
CLN3-217ENST00000565354 ZFP1Q6P2D0 407 aa15.07■□□□□ 0
CLN3-217ENST00000565354 SHQ1Q6PI26 577 aaKnown RBP15.07■□□□□ 0
CLN3-217ENST00000565354 LRFN4Q6PJG9 635 aa15.07■□□□□ 0
CLN3-217ENST00000565354 PRSS57Q6UWY2 283 aa15.07■□□□□ 0
CLN3-217ENST00000565354 TMEM179BQ7Z7N9 219 aa15.07■□□□□ 0
CLN3-217ENST00000565354 AMIGO2Q86SJ2 522 aa15.07■□□□□ 0
CLN3-217ENST00000565354 WDR31Q8NA23 367 aa15.07■□□□□ 0
CLN3-217ENST00000565354 LRTOMTQ8WZ04 291 aa15.07■□□□□ 0
CLN3-217ENST00000565354 PIGTQ969N2 578 aa15.07■□□□□ 0
CLN3-217ENST00000565354 NIPSNAP1Q9BPW8 284 aa15.07■□□□□ 0
CLN3-217ENST00000565354 C1QTNF6Q9BXI9 259 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms