RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SLCO1C1Q9NYB5 712 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 GPR160Q9UJ42 338 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ZNF229Q9UJW7 825 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 PCDHB10Q9UN67 800 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 CACNG2Q9Y698 323 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 MGAM2Q2M2H8 2515 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 IGHV1-69-2A0A0G2JMI3 117 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 TRAPPC13A5PLN9 417 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 PLPP2O43688 288 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 ENTPD5O75356 428 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 IGHG1P01857 330 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 F13BP05160 661 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 ASAH2BP0C7U1 165 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 CD247P20963 164 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 CRYBB2P43320 205 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 RAD52P43351 418 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 CLRN1P58418 232 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 SCGB2A2Q13296 93 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 TSTQ16762 297 aaKnown RBP14.37□□□□□ -0.11
CLN3-211ENST00000564091 PCGF3Q3KNV8 242 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 USP51Q70EK9 711 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 NANOGNBQ7Z5D8 188 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 PEG10Q86TG7 708 aaKnown RBP14.37□□□□□ -0.11
CLN3-211ENST00000564091 RETREG3Q86VR2 466 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 LRRC18Q8N456 261 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 RBM15BQ8NDT2 890 aaKnown RBP14.37□□□□□ -0.11
CLN3-211ENST00000564091 TAMM41Q96BW9 452 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 CGREF1Q99674 301 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 C1orf198Q9H425 327 aa14.37□□□□□ -0.11
CLN3-211ENST00000564091 LEF1Q9UJU2 399 aaPredicted RBP14.37□□□□□ -0.11
CLN3-211ENST00000564091 IQCMA0A1B0GVH7 501 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 TPD52L2O43399 206 aaKnown RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 DEAF1O75398 565 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 SNAP29O95721 258 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 MMP7P09237 267 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 ANPEPP15144 967 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 CCNOP22674 350 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 HILS1P60008 231 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 PLP2Q04941 152 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 HIST3H3Q16695 136 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 BEND6Q5SZJ8 279 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 ZNF771Q7L3S4 317 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 DPPA2Q7Z7J5 298 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 CPEB3Q8NE35 698 aaKnown RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 OR1J2Q8NGS2 313 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 GCDHQ92947 438 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 MPP4Q96JB8 637 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 PRSS27Q9BQR3 290 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 ZNF426Q9BUY5 554 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 MRPL13Q9BYD1 178 aaKnown RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 TMPRSS13Q9BYE2 586 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 BCL2L14Q9BZR8 327 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 SLC19A3Q9BZV2 496 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 LRMDAQ9H2I8 198 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 MEPEQ9NQ76 525 aaPredicted RBP14.36□□□□□ -0.11
CLN3-211ENST00000564091 DECR2Q9NUI1 292 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 NKIRAS2Q9NYR9 191 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 TRIM33Q9UPN9 1127 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 NDUFAF1Q9Y375 327 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 WIPI2Q9Y4P8 454 aa14.36□□□□□ -0.11
CLN3-211ENST00000564091 MCIDASD6RGH6 385 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 TRMUO75648 421 aaKnown RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 PTHP01270 115 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 ADRA2CP18825 462 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 DRD4P21917 467 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 CDAP32320 146 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 COMPP49747 757 aaPredicted RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 ZNF84P51523 738 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 HSF2Q03933 536 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 RPL18Q07020 188 aaKnown RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 NRN1LQ496H8 165 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 PABPC1L2AQ5JQF8 200 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 SPATA46Q5T0L3 261 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 PATL1Q86TB9 770 aaKnown RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 DPP10Q8N608 796 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 C3orf56Q8N813 242 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 NOXO1Q8NFA2 376 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 OR1J1Q8NGS3 322 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 OR10A6Q8NH74 314 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 PFN4Q8NHR9 129 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 SLC26A7Q8TE54 656 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 FAM216AQ8WUB2 273 aa14.35□□□□□ -0.11
CLN3-211ENST00000564091 THOC1Q96FV9 657 aaKnown RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 KAT8Q9H7Z6 458 aaKnown RBP14.35□□□□□ -0.11
CLN3-211ENST00000564091 A0A1W2PRG6 482 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 TMEM89A2RUT3 159 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 TRIM77I1YAP6 450 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 SPRY1O43609 319 aaPredicted RBP14.34□□□□□ -0.11
CLN3-211ENST00000564091 SPRY3O43610 288 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 SLC2A10O95528 541 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 IGHV2-5P01817 119 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 ACADSP16219 412 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 FUT1P19526 365 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 MAKP20794 623 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 APLNRP35414 380 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 AQP2P41181 271 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 CRYBA2P53672 197 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 UGT2B15P54855 530 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 TEKQ02763 1124 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 NFYCQ13952 458 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms