RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MCHR1Q99705 422 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 C11orf98E9PRG8 122 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 FARS2O95363 451 aaKnown RBP13.96□□□□□ -0.17
CLN3-208ENST00000561505 IGF2P01344 180 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 QDPRP09417 244 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 FAM157BP0CG42 384 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 ADRA2CP18825 462 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 MMP15P51511 669 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 MVKQ03426 396 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 SLC36A2Q495M3 483 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 RUNDC3AQ59EK9 446 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 C10orf128Q5T292 105 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 TMEM53Q6P2H8 277 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 THSD4Q6ZMP0 1018 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 OR4K5Q8NGD3 323 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 OR6T1Q8NGN1 323 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 NANPQ8TBE9 248 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 MCHR2Q969V1 340 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 NMD3Q96D46 503 aaKnown RBP13.96□□□□□ -0.17
CLN3-208ENST00000561505 MPP4Q96JB8 637 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 C7orf26Q96N11 449 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 CPPED1Q9BRF8 314 aaPredicted RBP13.96□□□□□ -0.17
CLN3-208ENST00000561505 CDH20Q9HBT6 801 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 KLHL21Q9UJP4 597 aa13.96□□□□□ -0.17
CLN3-208ENST00000561505 POLR3KQ9Y2Y1 108 aaPredicted RBP13.96□□□□□ -0.17
CLN3-208ENST00000561505 CDC14BO60729 498 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 CCL2P13500 99 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 TBC1D28Q2M2D7 210 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 ALKBH6Q3KRA9 238 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 AWAT1Q58HT5 328 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 TMEM255AQ5JRV8 349 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 ENTPD8Q5MY95 495 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 AVPI1Q5T686 147 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 USP51Q70EK9 711 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 C10orf53Q8N6V4 93 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 LRRC17Q8N6Y2 441 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 CPEB3Q8NE35 698 aaKnown RBP13.95□□□□□ -0.18
CLN3-208ENST00000561505 OR4D11Q8NGI4 311 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 SNX33Q8WV41 574 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 LIPHQ8WWY8 451 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 TRIM44Q96DX7 344 aaPredicted RBP13.95□□□□□ -0.18
CLN3-208ENST00000561505 PRSS27Q9BQR3 290 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 CCDC28BQ9BUN5 200 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 ZNF747Q9BV97 191 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 ZNF696Q9H7X3 374 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 NANSQ9NR45 359 aa13.95□□□□□ -0.18
CLN3-208ENST00000561505 NPIPB13A6NJU9 1138 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 EVPLLA8MZ36 301 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 CLDN25C9JDP6 229 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 NPIPB4C9JG80 1138 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 M0QX08 132 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 M0R3H8 397 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 SERPINI2O75830 405 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 UBOX5O94941 541 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 OR6A2O95222 327 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 CH25HO95992 272 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 IDH3AP50213 366 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 ATP4BP51164 291 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 STX1BP61266 288 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 UBA52P62987 128 aaKnown RBP13.94□□□□□ -0.18
CLN3-208ENST00000561505 MRPS34P82930 218 aaKnown RBP13.94□□□□□ -0.18
CLN3-208ENST00000561505 SLC16A14Q7RTX9 510 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 C1orf174Q8IYL3 243 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 DPP10Q8N608 796 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 SMYD1Q8NB12 490 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 RNF217Q8TC41 542 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 ADAMTS16Q8TE57 1224 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 RAB1CQ92928 201 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 MARS2Q96GW9 593 aaKnown RBP13.94□□□□□ -0.18
CLN3-208ENST00000561505 POM121L2Q96KW2 1035 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 SLC6A7Q99884 636 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 LRMDAQ9H2I8 198 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 SIAEQ9HAT2 523 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 SMURF2Q9HAU4 748 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 MEPEQ9NQ76 525 aaPredicted RBP13.94□□□□□ -0.18
CLN3-208ENST00000561505 CCDC167Q9P0B6 97 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLN3-208ENST00000561505 SLC13A4Q9UKG4 626 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 ANGPT4Q9Y264 503 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 CACNG2Q9Y698 323 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 V9GYY5 206 aaPredicted RBP13.94□□□□□ -0.18
CLN3-208ENST00000561505 WNK2Q9Y3S1 2297 aa13.94□□□□□ -0.18
CLN3-208ENST00000561505 TRAPPC13A5PLN9 417 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 KCNAB3O43448 404 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 RNF13O43567 381 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 BCL10O95999 233 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 IGHV1-46P01743 117 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 IGHG1P01857 330 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 LCKP06239 509 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 HKR1P10072 659 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 CD247P20963 164 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 AQP1P29972 269 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 UGT2B15P54855 530 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 MAGOHP61326 146 aaKnown RBP13.93□□□□□ -0.18
CLN3-208ENST00000561505 PLP2Q04941 152 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 MELKQ14680 651 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 HFEQ30201 348 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 DCAF12L2Q5VW00 463 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 MBNL2Q5VZF2 373 aaKnown RBP13.93□□□□□ -0.18
CLN3-208ENST00000561505 TTC33Q6PID6 262 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms