RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SERPINA5P05154 406 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 MMP7P09237 267 aaPredicted RBP15.22■□□□□ 0.03
HDDC3-205ENST00000559898 OR8G3PP0DMU2 310 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 NAT2P11245 290 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 IFI30P13284 250 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 NCK1P16333 377 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 GLRXP35754 106 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 MDH1P40925 334 aaKnown RBP15.22■□□□□ 0.03
HDDC3-205ENST00000559898 SLC7A2P52569 658 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 LRRC75AQ8NAA5 344 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 PCYOX1LQ8NBM8 494 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 CPEB3Q8NE35 698 aaKnown RBP15.22■□□□□ 0.03
HDDC3-205ENST00000559898 IL17RDQ8NFM7 739 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 LIPHQ8WWY8 451 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 NSMAFQ92636 917 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 YIPF5Q969M3 257 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 REV1Q9UBZ9 1251 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 MED31Q9Y3C7 131 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 MXRA5Q9NR99 2828 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 COL6A5A8TX70 2615 aa15.22■□□□□ 0.03
HDDC3-205ENST00000559898 TRAV27A0A087WT01 109 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 LOC100289279A0A1B0GTE1 492 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 A0A1W2PRG6 482 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 MCIDASD6RGH6 385 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 MGRN1O60291 552 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 LMX1BO60663 402 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 SCG5P05408 212 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 ZNF23P17027 643 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 ZNF26P17031 533 aaPredicted RBP15.21■□□□□ 0.03
HDDC3-205ENST00000559898 GIFP27352 417 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 APEX1P27695 318 aaKnown RBP15.21■□□□□ 0.03
HDDC3-205ENST00000559898 RBMXP38159 391 aaKnown RBP15.21■□□□□ 0.03
HDDC3-205ENST00000559898 GSK3BP49841 420 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 RIN1Q13671 783 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 GKAP1Q5VSY0 366 aaPredicted RBP15.21■□□□□ 0.03
HDDC3-205ENST00000559898 NRMQ8IXM6 262 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 ZNF786Q8N393 782 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 SLC30A7Q8NEW0 376 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 UBASH3BQ8TF42 649 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 PRRC1Q96M27 445 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 SNX18Q96RF0 628 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 RNF121Q9H920 327 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 DUSP13Q9UII6 198 aa15.21■□□□□ 0.03
HDDC3-205ENST00000559898 ZNF346Q9UL40 294 aaKnown RBP15.21■□□□□ 0.03
HDDC3-205ENST00000559898 CXCR6O00574 342 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 SYNGR3O43761 229 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 PRSS23O95084 383 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 ZNF682O95780 498 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 MAGEB1P43366 347 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 ZNF133P52736 654 aaPredicted RBP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 C10orf128Q5T292 105 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 OTPQ5XKR4 325 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 SLC25A47Q6Q0C1 308 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 SLC16A14Q7RTX9 510 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 PHC2Q8IXK0 858 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 OR13C2Q8NGS9 318 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 OR51A7Q8NH64 312 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 AKR7LQ8NHP1 331 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 RP9Q8TA86 221 aaKnown RBP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 NEU4Q8WWR8 484 aaPredicted RBP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 BPIFA2Q96DR5 249 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 POLR2J2Q9GZM3 115 aaKnown RBP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 POLR2J3Q9H1A7 115 aaKnown RBP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 HIF3AQ9Y2N7 669 aa15.2■□□□□ 0.02
HDDC3-205ENST00000559898 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.2■□□□□ 0.02
HDDC3-205ENST00000559898 H7C1C5 153 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 CDC42EP2O14613 210 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 IMPA2O14732 288 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 SERPINA1P01009 418 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 TGFAP01135 160 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 IGF2P01344 180 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 GZMKP49863 264 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 LCN6P62502 163 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 GALK2Q01415 458 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 CCNIQ14094 377 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 ALG10Q5BKT4 473 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 FAM120AOSQ5T036 256 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 CBLL1Q75N03 491 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 HSH2DQ96JZ2 352 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 BEX2Q9BXY8 128 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 TXNIPQ9H3M7 391 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 NARFLQ9H6Q4 476 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 MYOZ1Q9NP98 299 aaPredicted RBP15.19■□□□□ 0.02
HDDC3-205ENST00000559898 SLC7A8Q9UHI5 535 aa15.19■□□□□ 0.02
HDDC3-205ENST00000559898 LOC100509620A0A075B734 347 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 A0A087WUU8 490 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 M0R233 179 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 IFNA14P01570 189 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 TACSTD2P09758 323 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 FAM157CP0CG43 387 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 THRBP10828 461 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 ZNF32P17041 273 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 WNT5AP41221 380 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 GPR4P46093 362 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 CTXN1P60606 82 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 ERVK-25P63136 954 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 GLO1Q04760 184 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 DBPQ10586 325 aaPredicted RBP15.18■□□□□ 0.02
HDDC3-205ENST00000559898 ST3GAL3Q11203 375 aa15.18■□□□□ 0.02
HDDC3-205ENST00000559898 SGCAQ16586 387 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms