RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ERP29P30040 261 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 MAT2AP31153 395 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 HSD17B2P37059 387 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 CTRLP40313 264 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ETV6P41212 452 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NPY2RP49146 381 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 RAG2P55895 527 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GPX6P59796 221 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 MRPS15P82914 257 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PRKCDQ05655 676 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 INCA1Q0VD86 236 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 BST1Q10588 318 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TSTA3Q13630 321 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FLOT2Q14254 428 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 LASP1Q14847 261 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PDK2Q15119 407 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SLC39A12Q504Y0 691 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PDPK2PQ6A1A2 396 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PPP1R2P3Q6NXS1 205 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PNCKQ6P2M8 343 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 HACD2Q6Y1H2 254 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SLC26A11Q86WA9 606 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NUDCD3Q8IVD9 361 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TCTE3Q8IZS6 198 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF619Q8N2I2 560 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 HDDC3Q8N4P3 179 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 Q8N9W7 124 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FNDC5Q8NAU1 212 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C20orf203Q8NBC4 194 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SIDT2Q8NBJ9 832 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 OR5H6Q8NGV6 325 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FANK1Q8TC84 345 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ZFAND1Q8TCF1 268 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 URGCPQ8TCY9 931 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ST7LQ8TDW4 575 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C7orf33Q8WU49 177 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 MCHR2Q969V1 340 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SGK3Q96BR1 496 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 DNAJC19Q96DA6 116 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ASB9Q96DX5 294 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C5orf30Q96GV9 206 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 RNF170Q96K19 258 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C9orf72Q96LT7 481 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GLT1D1Q96MS3 346 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 RILPQ96NA2 401 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FAM111AQ96PZ2 611 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FAM213AQ9BRX8 229 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C9orf16Q9BUW7 83 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 CHID1Q9BWS9 393 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 RAB34Q9BZG1 259 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C6orf62Q9GZU0 229 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NXF2Q9GZY0 626 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PPA2Q9H2U2 334 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NARFLQ9H6Q4 476 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SMYD3Q9H7B4 428 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 C8orf33Q9H7E9 229 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NIPAL2Q9H841 368 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 VPS37BQ9H9H4 285 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 EFCAB1Q9HAE3 211 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PRMT8Q9NR22 394 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 MRPL39Q9NYK5 338 aaKnown RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GLTPQ9NZD2 209 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 FBXO5Q9UKT4 447 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 CLUHO75153 1309 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NRCAMQ92823 1304 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 IGSF9BQ9UPX0 1349 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 CNTNAP1P78357 1384 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 COL1A1P02452 1464 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF142P52746 1687 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 KIF13BQ9NQT8 1826 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 MYH6P13533 1939 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 KIDINS220Q9ULH0 1771 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MARF1Q9Y4F3 1742 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 KIF1AQ12756 1690 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 USP54Q70EL1 1684 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 A0A0G2JMP0 313 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PQLC2LA1A4F0 135 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 KRT87PA6NCN2 255 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SLC9B1P1A6NJY1 282 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PP2D1A8MPX8 630 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 C12orf71A8MTZ7 269 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PDZK1P1A8MUH7 402 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LOC110117498-PIK3R3F6TDL0 507 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CLDN3O15551 220 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 GATCO43716 136 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF780AO75290 641 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 UGT2B17O75795 530 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RHOBTB1O94844 696 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MFN2O95140 757 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 TRIM16O95361 564 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LYPLA2O95372 231 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 TSPAN12O95859 305 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 TGM6O95932 706 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 APOA1P02647 267 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINE1P05121 402 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DBTP11182 482 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SFTPCP11686 197 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 IL7P13232 177 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 XRCC1P18887 633 aaPredicted RBP2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms