RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 POU2AF1Q16633 256 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 PMF1Q6P1K2 205 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 KDELC1Q6UW63 502 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 NTM-AS1Q6ZSK4 140 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 MMAAQ8IVH4 418 aaKnown RBP1.8□□□□□ -2.12
VPS13C-207ENST00000558919 RIMKLAQ8IXN7 391 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 LRRC75A-AS1Q8N1F1 130 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 OR5D13Q8NGL4 314 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 ZNF606Q8WXB4 792 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 MS4A4EQ96PG1 132 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 RNF157Q96PX1 679 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 PSKH2Q96QS6 385 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 SLC39A3Q9BRY0 314 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 MRPL37Q9BZE1 423 aaKnown RBP1.8□□□□□ -2.12
VPS13C-207ENST00000558919 MFFQ9GZY8 342 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 MCCC2Q9HCC0 563 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 COX16Q9P0S2 106 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 PTBP2Q9UKA9 531 aaKnown RBP1.8□□□□□ -2.12
VPS13C-207ENST00000558919 CDH9Q9ULB4 789 aa1.8□□□□□ -2.12
VPS13C-207ENST00000558919 IGLV1-50A0A075B6I6 118 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 SYNJ2BP-COX16A0A087WUM0 186 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 TRAV39A0A0B4J263 110 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 A0A0B4J2A0 478 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 TMEM223A0PJW6 202 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 CIB4A0PJX0 185 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 ZNF726A6NNF4 738 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 ZNF208O43345 1280 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 CLDN9O95484 217 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 AK4P27144 223 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-207ENST00000558919 HSD17B2P37059 387 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 AIF1P55008 147 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 LOXL1Q08397 574 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-207ENST00000558919 GINS1Q14691 196 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 PON3Q15166 354 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 TMEM179Q6ZVK1 233 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 EFL1Q7Z2Z2 1120 aaKnown RBP1.79□□□□□ -2.12
VPS13C-207ENST00000558919 TMEM135Q86UB9 458 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 CEP112Q8N8E3 955 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 EIF1ADQ8N9N8 165 aaKnown RBP1.79□□□□□ -2.12
VPS13C-207ENST00000558919 BHLHE23Q8NDY6 225 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 NOXO1Q8NFA2 376 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 OR4S2Q8NH73 311 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 LKAAEAR1Q8TD35 194 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 RPRD1AQ96P16 312 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-207ENST00000558919 MTMR9Q96QG7 549 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 OR8B4Q96RC9 309 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 C12orf10Q9HB07 376 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 SHPKQ9UHJ6 478 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 ADAM28Q9UKQ2 775 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 CLEC4AQ9UMR7 237 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 CDHR2Q9BYE9 1310 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 KANK1Q14678 1352 aa1.79□□□□□ -2.12
VPS13C-207ENST00000558919 SNTNA6NMZ2 147 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 RAD51BO15315 384 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 FCMRO60667 390 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 SURF6O75683 361 aaKnown RBP1.78□□□□□ -2.12
VPS13C-207ENST00000558919 OR7A10O76100 309 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 GABARAPO95166 117 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 IL1BP01584 269 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 IGKV4-1P06312 121 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 SSR1P43307 286 aaKnown RBP1.78□□□□□ -2.12
VPS13C-207ENST00000558919 CSNK1A1P48729 337 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 ARG2P78540 354 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 OGDHQ02218 1023 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 CEP55Q53EZ4 464 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 ENPP6Q6UWR7 440 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 CALHM3Q86XJ0 350 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 OSR2Q8N2R0 312 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 FAM83FQ8NEG4 500 aaPredicted RBP1.78□□□□□ -2.12
VPS13C-207ENST00000558919 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.78□□□□□ -2.12
VPS13C-207ENST00000558919 TM4SF18Q96CE8 201 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 MED8Q96G25 268 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 NPY6RQ99463 290 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 ZBTB18Q99592 522 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 COPS8Q99627 209 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 PARP12Q9H0J9 701 aaKnown RBP1.78□□□□□ -2.12
VPS13C-207ENST00000558919 FN3KRPQ9HA64 309 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 SGK2Q9HBY8 427 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 KIAA1257Q9ULG3 409 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 PSG8Q9UQ74 426 aa1.78□□□□□ -2.12
VPS13C-207ENST00000558919 COL5A1P20908 1838 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 FAM240BA0A1B0GVZ2 78 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 GOLGA8SH3BPF8 625 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 ZNF207O43670 478 aaKnown RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 TIMM8AO60220 97 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 TSPAN12O95859 305 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 FABP3P05413 133 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 BCHEP06276 602 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 C2P06681 752 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 CD1CP29017 333 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 VHLP40337 213 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 MAGEA8P43361 318 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 ATP1B3P54709 279 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 RPL23AP62750 156 aaKnown RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 ZNF92Q03936 586 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 ZNF816Q0VGE8 651 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 PDZK1Q5T2W1 519 aa1.77□□□□□ -2.13
VPS13C-207ENST00000558919 NCCRP1Q6ZVX7 275 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 PUSL1Q8N0Z8 303 aaKnown RBP1.77□□□□□ -2.13
VPS13C-207ENST00000558919 GATSQ8NAP1 163 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms