RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ROBO4Q8WZ75 1007 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 MOGAT1Q96PD6 335 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SMIM3Q9BZL3 60 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 MRM2Q9UI43 246 aaKnown RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 SLC27A6Q9Y2P4 619 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 POM121BA6NF01 834 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SNRPGP15A8MWD9 76 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 MOSPD3O75425 235 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 IFNA6P05013 189 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 S100A9P06702 114 aaKnown RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 CTSBP07858 339 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 PGAM2P15259 253 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SLC2A5P22732 501 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 DNASE1L1P49184 302 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 FLI1Q01543 452 aaPredicted RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 UBXN2BQ14CS0 331 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 ALG10Q5BKT4 473 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 CCDC36Q8IYA8 594 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 PM20D2Q8IYS1 436 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 ZNF615Q8N8J6 731 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 POMGNT2Q8NAT1 580 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 NUDCD2Q8WVJ2 157 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 H7C417 338 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 ABCD4O14678 606 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 PTP4A3O75365 173 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CTAG2O75638 210 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 OR2A4O95047 310 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CPN1P15169 458 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 PPP1CAP62136 330 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 DHRS2Q13268 280 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 KRBOX4Q5JUW0 171 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 NUDT18Q6ZVK8 323 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 NPEPL1Q8NDH3 523 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 GPR148Q8TDV2 347 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 ELP5Q8TE02 316 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 GAL3ST3Q96A11 431 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 OR2A7Q96R45 310 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 MTFP1Q9UDX5 166 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 GPN3Q9UHW5 284 aaPredicted RBP10.3□□□□□ -0.76
LDLR-208ENST00000558518 LAMA1P25391 3075 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 A0A0B4J2E0 115 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 A0A1B0GX12 115 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 H0YGG7 62 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 SIGLEC6O43699 453 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 UBBP0CG47 229 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 UBCP0CG48 685 aaKnown RBP10.3□□□□□ -0.76
LDLR-208ENST00000558518 NPBWR1P48145 328 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 ARF3P61204 181 aaPredicted RBP10.3□□□□□ -0.76
LDLR-208ENST00000558518 EIF2B5Q13144 721 aaKnown RBP10.3□□□□□ -0.76
LDLR-208ENST00000558518 ZIC1Q15915 447 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CSRP2Q16527 193 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 PAN3Q58A45 887 aaKnown RBP10.3□□□□□ -0.76
LDLR-208ENST00000558518 ELFN2Q5R3F8 820 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 FBXO42Q6P3S6 717 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 FIGLAQ6QHK4 219 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 TMPRSS9Q7Z410 1059 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 ZNF584Q8IVC4 421 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 MFSD9Q8NBP5 474 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 OR14A16Q8NHC5 309 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 POTEKPQ9BYX7 375 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 SYNDIG1Q9H7V2 258 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 NIT2Q9NQR4 276 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 MSRAQ9UJ68 235 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 OR2T1O43869 369 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 GPRIN2O60269 458 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CDC40O60508 579 aaKnown RBP eCLIP10.3□□□□□ -0.76
LDLR-208ENST00000558518 CBX5P45973 191 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 SCRN3Q0VDG4 424 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CSNK1A1LQ8N752 337 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 OR51A2Q8NGJ7 313 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 TLNRD1Q9H1K6 362 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 COLEC10Q9Y6Z7 277 aa10.3□□□□□ -0.76
LDLR-208ENST00000558518 CPED1A4D0V7 1026 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 SERPINA5P05154 406 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 NME2P22392 152 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 MAOBP27338 520 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 DPTQ07507 201 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 SMCO1Q147U7 214 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 CST6Q15828 149 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ULK3Q6PHR2 472 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 RBMS3Q6XE24 437 aaKnown RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 TMPPEQ6ZT21 453 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 SYS1Q8N2H4 156 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 SVBPQ8N300 66 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 TEX19Q8NA77 164 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 OR2G2Q8NGZ5 317 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 LILRB1Q8NHL6 650 aaPredicted RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 C10orf90Q96M02 699 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ESRP2Q9H6T0 727 aaKnown RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 IFT22Q9H7X7 185 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 TAS2R4Q9NYW5 299 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 CHRNA9Q9UGM1 479 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 C19orf53Q9UNZ5 99 aaPredicted RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 TRAV14DV4A0A0A6YYC5 116 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 RFPL4AA6NLU0 287 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 RFPL4AL1F8VTS6 287 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 XKRYO14609 159 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ZNF208O43345 1280 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 XRCC3O43542 346 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 IGKV1D-16P01601 117 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms