RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CAPZA1P52907 286 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 RPL13AP3Q6NVV1 102 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 LRRTM1Q86UE6 522 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 SPICQ8N5J4 248 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 JAGN1Q8N5M9 183 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 AVL9Q8NBF6 648 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 PXT1Q8NFP0 134 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 OR5M9Q8NGP3 310 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ROBO4Q8WZ75 1007 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 CCDC74AQ96AQ1 378 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 RBM18Q96H35 190 aaKnown RBP11.18□□□□□ -0.62
LDLR-205ENST00000557933 SPACA5Q96QH8 159 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 OR2M4Q96R27 311 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 PITHD1Q9GZP4 211 aaPredicted RBP11.18□□□□□ -0.62
LDLR-205ENST00000557933 HAO2Q9NYQ3 351 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ACTR10Q9NZ32 417 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 AKAP7Q9P0M2 348 aaPredicted RBP11.18□□□□□ -0.62
LDLR-205ENST00000557933 COLEC10Q9Y6Z7 277 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 CTDSPLO15194 276 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 AGR2O95994 175 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ATP1B3P54709 279 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 POU4F2Q12837 409 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ALG10Q5BKT4 473 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 WDR38Q5JTN6 314 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 C3orf33Q6P1S2 294 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ULK3Q6PHR2 472 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 HDDC2Q7Z4H3 204 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 TMEM200AQ86VY9 491 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 SLC35F3Q8IY50 421 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 CSNK1A1LQ8N752 337 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 POMGNT2Q8NAT1 580 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 OR2G2Q8NGZ5 317 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 ANKRD9Q96BM1 317 aaPredicted RBP11.18□□□□□ -0.62
LDLR-205ENST00000557933 ASB16Q96NS5 453 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 CMKLR1Q99788 373 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 LDAHQ9H6V9 325 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 PCDHB16Q9NRJ7 776 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 HPF1Q9NWY4 346 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 LOC101059948A0A1B0GTJ6 334 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 C13orf42A0A1B0GVH6 325 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 CCDC85CA6NKD9 419 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 SPARCP09486 303 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 OR4E1P0C645 316 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 CD53P19397 219 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 PI3P19957 117 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 PBX2P40425 430 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 EIF1AXP47813 144 aaKnown RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 SKP1P63208 163 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 EIF2B1Q14232 305 aaKnown RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 TOMM34Q15785 309 aaPredicted RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 ITPRIPL2Q3MIP1 535 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 LY6G6FQ5SQ64 297 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 STEAP1BQ6NZ63 245 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 NUDT18Q6ZVK8 323 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 OR1S2Q8NGQ3 325 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 RSC1A1Q92681 617 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 ZFYVE21Q9BQ24 234 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 RTN4RQ9BZR6 473 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 TRIM2Q9C040 744 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 APMAPQ9HDC9 416 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 SERTAD3Q9UJW9 196 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 B9D1Q9UPM9 204 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 IGKV1D-42A0A075B6H8 117 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 KRBOX1C9JBD0 128 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 H7C417 338 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 SLC25A12O75746 678 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 HLA-AP01891 365 aaKnown RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 CPN1P15169 458 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 ST6GAL1P15907 406 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 MNDAP41218 407 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 AKR1C3P42330 323 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 TDGQ13569 410 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 ELFN2Q5R3F8 820 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 GLYATL3Q5SZD4 288 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 UNQ9370/PRO34162Q6UXP9 181 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 CHRDL2Q6WN34 429 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 OVCH2Q7RTZ1 564 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 BHLHE23Q8NDY6 225 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 VRK1Q99986 396 aaPredicted RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 DPYSL5Q9BPU6 564 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 RAB11FIP5Q9BXF6 653 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 KIR3DX1Q9H7L2 352 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 ELOVL3Q9HB03 270 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 THAP10Q9P2Z0 257 aaPredicted RBP11.17□□□□□ -0.62
LDLR-205ENST00000557933 MTFP1Q9UDX5 166 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 SLC17A4Q9Y2C5 497 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 RNF215Q9Y6U7 377 aa11.17□□□□□ -0.62
LDLR-205ENST00000557933 OR6C76A6NM76 312 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 AGPAT2O15120 278 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 FADS1O60427 444 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 B3GALNT1O75752 331 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 GLCEO94923 617 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 DCNP07585 359 aaKnown RBP11.16□□□□□ -0.62
LDLR-205ENST00000557933 HPGDP15428 266 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 PRSS3P35030 304 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 EPHA4P54764 986 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 MFGE8Q08431 387 aaPredicted RBP11.16□□□□□ -0.62
LDLR-205ENST00000557933 MESTQ5EB52 335 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 OLFML2AQ68BL7 652 aa11.16□□□□□ -0.62
LDLR-205ENST00000557933 ASPHD2Q6ICH7 369 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms