RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OMG	P23515	440 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	HRH1	P35367	487 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TAGLN2	P37802	199 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ATP1B3	P54709	279 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	PCBP4	P57723	403 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	DOC2B	Q14184	412 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CDK5R1	Q15078	307 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	IGSF11	Q5DX21	431 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MRM1	Q6IN84	353 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2W3	Q7Z3T1	314 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SULF2	Q8IWU5	870 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFP62	Q8NB50	900 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR5D18	Q8NGL1	313 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR5D14	Q8NGL3	314 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR6N1	Q8NGY5	312 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SNIP1	Q8TAD8	396 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TSSK2	Q96PF2	358 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RBP7	Q96R05	134 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	NELFA	Q9H3P2	528 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	BANF2	Q9H503	90 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	GAREM1	Q9H706	876 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF442	Q9H7R0	627 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM86C1	Q9NVL1	165 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	PURG	Q9UJV8	347 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	NXT1	Q9UKK6	140 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC35A3	Q9Y2D2	325 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MRPS28	Q9Y2Q9	187 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FITM1	A5D6W6	292 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	C2orf72	A6NCS6	295 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	IMPA2	O14732	288 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ABLIM3	O94929	683 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RNH1	P13489	461 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FOLR1	P15328	257 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CRABP1	P29762	137 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RPS27	P42677	84 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	EMP2	P54851	167 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TLE3	Q04726	772 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SNTB1	Q13884	538 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	DEFB115	Q30KQ5	88 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF425	Q6IV72	752 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM219A	Q8IW50	185 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC39A11	Q8N1S5	342 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	LILRB2	Q8N423	598 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXL6	Q8N531	539 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLYATL2	Q8WU03	294 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SMIM4	Q8WVI0	70 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF707	Q96C28	371 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	HIST1H2AA	Q96QV6	131 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR5B2	Q96R09	309 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CMSS1	Q9BQ75	279 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	WFDC6	Q9BQY6	131 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADAT1	Q9BUB4	502 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR52A5	Q9H2C5	316 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	KCNJ16	Q9NPI9	418 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RNF186	Q9NXI6	227 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPHK1	Q9NYA1	384 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TAS2R5	Q9NYW4	299 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF346	Q9UL40	294 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SCML1	Q9UN30	329 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MOK	Q9UQ07	419 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CIT	O14578	2027 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A1B0GTH9	108 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005		F5H5K5	113 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	HSPB6	O14558	160 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	NUDT21	O43809	227 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2C1	O95371	312 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CSF2RA	P15509	400 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	NQO2	P16083	231 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	HHEX	Q03014	270 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRDX1	Q06830	199 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	KLF9	Q13886	244 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ETFDH	Q16134	617 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CDON	Q4KMG0	1287 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	PLA1A	Q53H76	456 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM31	Q5JXX7	168 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM64	Q6YI46	380 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MED25	Q71SY5	747 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	DCXR	Q7Z4W1	244 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MDGA2	Q7Z553	956 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	LYG2	Q86SG7	212 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MORN4	Q8NDC4	146 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2AK2	Q8NG84	335 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4D9	Q8NGE8	314 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMED6	Q8WW62	240 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR1F2P	Q96R84	312 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ABHD1	Q96SE0	405 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SNRPGP15	A8MWD9	76 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2F2	O95006	317 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	NSA2	O95478	260 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	CTSA	P10619	480 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	NME1	P15531	152 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC6A1	P30531	599 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAP1A	P62834	184 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	DUSP8	Q13202	625 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2F1	Q13607	317 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HMGN3	Q15651	99 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM52B	Q4KMG9	183 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM201	Q5SNT2	666 aa		4.55	□□□□□ -1.68

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