RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RUNX2Q13950 521 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 HABP2Q14520 560 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 NKPD1Q17RQ9 610 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 MOGAT2Q3SYC2 334 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 ATPAF1Q5TC12 328 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 VN1R4Q7Z5H5 301 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 PAQR4Q8N4S7 273 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 KCNRGQ8N5I3 272 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 OR5T2Q8NGG2 359 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 NUBPLQ8TB37 319 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 THAP6Q8TBB0 222 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 RPS4Y2Q8TD47 263 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 PATE1Q8WXA2 126 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM106AQ96A25 262 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF775Q96BV0 537 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 RRNAD1Q96FB5 475 aaKnown RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 SELENOIQ9C0D9 397 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 SLITRK2Q9H156 845 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 SFXN1Q9H9B4 322 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 TCF7L1Q9HCS4 588 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 PRR13Q9NZ81 148 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 KCNG2Q9UJ96 466 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 FARSAQ9Y285 508 aaKnown RBP4.4□□□□□ -1.7
LIMA1-214ENST00000552783 PLEKHA6Q9Y2H5 1048 aa4.4□□□□□ -1.7
LIMA1-214ENST00000552783 FANCMQ8IYD8 2048 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 A0A0B4J2E0 115 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 A0A1B0GX12 115 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 WIPF3A6NGB9 483 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FAM25EA8MYX2 175 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SGCEO43556 437 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 B3GALT2O43825 422 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 EML2O95834 649 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 IGKV1D-16P01601 117 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 APOC1P02654 83 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FABP1P07148 127 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 HNRNPA1P09651 372 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 HOXB1P14653 301 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RPS4Y1P22090 263 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ADH6P28332 368 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 GABRA3P34903 492 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ACAA2P42765 397 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 POU3F4P49335 361 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 GMFBP60983 142 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ACTA2P62736 377 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ACTG2P63267 376 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 BLOC1S1P78537 153 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PON3Q15166 354 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 MICBQ29980 383 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 AKIRIN2Q53H80 203 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PAN3Q58A45 887 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 DHRS7BQ6IAN0 325 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C11orf87Q6NUJ2 197 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 STEAP1BQ6NZ63 245 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 KIRREL2Q6UWL6 708 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TAF8Q7Z7C8 310 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM17Q86X19 198 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PRSS35Q8N3Z0 413 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C12orf45Q8N5I9 185 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 DEFB119Q8N690 84 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PLPP7Q8NBV4 271 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TMIEQ8NEW7 156 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 OR5T3Q8NGG3 340 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PHOSPHO1Q8TCT1 267 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CCDC74AQ96AQ1 378 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RSPH9Q9H1X1 276 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 WDR76Q9H967 626 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FGF22Q9HCT0 170 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SERTAD3Q9UJW9 196 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 NUP210LQ5VU65 1888 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 A0A1B0GTI1 187 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM82A0PJX8 343 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PQLC2LA1A4F0 135 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 LINC01553A4QN01 128 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 DUXAA6NLW8 204 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 HRKO00198 91 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 BCL2L11O43521 198 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SULT1B1O43704 296 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 LILRB3O75022 631 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RAB40ALP0C0E4 278 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 UBBP0CG47 229 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 UBCP0CG48 685 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF10P21506 573 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 DLSTP36957 453 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CASRP41180 1078 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CAPZA2P47755 286 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RPS27AP62979 156 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 UBA52P62987 128 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ILF3Q12906 894 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 PDZK1IP1Q13113 114 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ARHGAP19Q14CB8 494 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SWI5Q1ZZU3 235 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 MST1LQ2TV78 715 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C2orf76Q3KRA6 126 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SCGB2B2Q4G0G5 96 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ALG10BQ5I7T1 473 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 GLT8D1Q68CQ7 371 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF776Q68DI1 518 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FAM109BQ6ICB4 259 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RAB12Q6IQ22 244 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C3orf33Q6P1S2 294 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms