RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 THSD4Q6ZMP0 1018 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 RRM2BQ7LG56 351 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 CDK20Q8IZL9 346 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 FBXO17Q96EF6 278 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 TRMT61AQ96FX7 289 aaKnown RBP13.05□□□□□ -0.32
UBE3B-212ENST00000540230 IL1RAPQ9NPH3 570 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 IL20RAQ9UHF4 553 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 SIGLEC7Q9Y286 467 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 SH3PXD2BA1X283 911 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 PTP4A3O75365 173 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 GADD45GO95257 159 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 OR8G3PP0DMU2 310 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 RRM2P31350 389 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 RAB39AQ14964 217 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 ADIPOQQ15848 244 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 SWI5Q1ZZU3 235 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 SLC25A47Q6Q0C1 308 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 TRPM8Q7Z2W7 1104 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 FAM122BQ7Z309 247 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 HDDC2Q7Z4H3 204 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 ZDHHC21Q8IVQ6 265 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 NANOS1Q8WY41 292 aaKnown RBP13.04□□□□□ -0.32
UBE3B-212ENST00000540230 NSMAFQ92636 917 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 NABP1Q96AH0 204 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 C18orf12Q96KH6 178 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 COX4I2Q96KJ9 171 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 Q96M85 177 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 MOV10Q9HCE1 1003 aaKnown RBP13.04□□□□□ -0.32
UBE3B-212ENST00000540230 TMEM5Q9Y2B1 443 aa13.04□□□□□ -0.32
UBE3B-212ENST00000540230 IMPA2O14732 288 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 UBOX5O94941 541 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 UBL3O95164 117 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ITGA2P17301 1181 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF84P51523 738 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 TAF11Q15544 211 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 MSMPQ1L6U9 139 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ANKDD1AQ495B1 522 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 MESTQ5EB52 335 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 LCN8Q6JVE9 175 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 KRT80Q6KB66 452 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ZER1Q7Z7L7 766 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 LRRC18Q8N456 261 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ARIH2OSQ8N7S6 290 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 MCUR1Q96AQ8 359 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 RSRC1Q96IZ7 334 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ALG12Q9BV10 488 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ZANQ9Y493 2812 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ANK3Q12955 4377 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 RTTNQ86VV8 2226 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 SMAD7O15105 426 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 RAB36O95755 333 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 CD14P08571 375 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 INHBBP09529 407 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 OR4A8P0C604 315 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF35P13682 527 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 THBS4P35443 961 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 RPL4P36578 427 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 SNTB2Q13425 540 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 TNK1Q13470 666 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 TRIM25Q14258 630 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 CLEC12BQ2HXU8 276 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 SLC16A14Q7RTX9 510 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 ARHGAP24Q8N264 748 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 NUP37Q8NFH4 326 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 OR4F15Q8NGB8 312 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 CCDC124Q96CT7 223 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 RASD2Q96D21 266 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 SMURF2Q9HAU4 748 aa13.03□□□□□ -0.32
UBE3B-212ENST00000540230 STX18Q9P2W9 335 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 PRPF19Q9UMS4 504 aaKnown RBP13.03□□□□□ -0.32
UBE3B-212ENST00000540230 GPRIN2O60269 458 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 LY6HO94772 140 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 NDUFB2O95178 105 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 FARS2O95363 451 aaKnown RBP13.02□□□□□ -0.33
UBE3B-212ENST00000540230 MMP7P09237 267 aaPredicted RBP13.02□□□□□ -0.33
UBE3B-212ENST00000540230 CCL2P13500 99 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 FOSL1P15407 271 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 MAGEA2P43356 314 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 MRPS34P82930 218 aaKnown RBP13.02□□□□□ -0.33
UBE3B-212ENST00000540230 PPP1R8Q12972 351 aaKnown RBP13.02□□□□□ -0.33
UBE3B-212ENST00000540230 ETFDHQ16134 617 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 DNM1P46Q6ZS02 220 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 PAQR4Q8N4S7 273 aaPredicted RBP13.02□□□□□ -0.33
UBE3B-212ENST00000540230 ZNF570Q96NI8 536 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 C1orf21Q9H246 121 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 AURKCQ9UQB9 309 aa13.02□□□□□ -0.33
UBE3B-212ENST00000540230 CR1P17927 2039 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 TEX13CA0A0J9YWL9 993 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 UNC119BA6NIH7 251 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 H7C417 338 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 SSX4O60224 188 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 SERPINA5P05154 406 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 SCG5P05408 212 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 SERPINF1P36955 418 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 DAG1Q14118 895 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 NRN1LQ496H8 165 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 THEM4Q5T1C6 240 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 FAM205BPQ63HN1 556 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 Q71RC1 249 aaPredicted RBP13.01□□□□□ -0.33
UBE3B-212ENST00000540230 DHFR2Q86XF0 187 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms