RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 OR4K5Q8NGD3 323 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 SLC7A13Q8TCU3 470 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 CCT8L2Q96SF2 557 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 KCNK17Q96T54 332 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 CDRT15Q96T59 188 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 PLK3Q9H4B4 646 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 STX18Q9P2W9 335 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 ZNF346Q9UL40 294 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 UGT2A1Q9Y4X1 527 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 CHD3Q12873 2000 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 NAV3Q8IVL0 2385 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 A0A1W2PRQ8 180 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 TMEM129A0AVI4 362 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 hCG_2039718K7EN88 272 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 ENTPD5O75356 428 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 LY6HO94772 140 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 DIRAS1O95057 198 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 FARS2O95363 451 aaKnown RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 SEMG1P04279 462 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 H1F0P07305 194 aaKnown RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 ZNF26P17031 533 aaPredicted RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 NR4A1P22736 598 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 SLC9A3P48764 834 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 ZNF84P51523 738 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 EFNA4P52798 201 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 FMODQ06828 376 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 KRTAP1-1Q07627 177 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 DGCR6Q14129 220 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 ANKDD1AQ495B1 522 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 NRN1LQ496H8 165 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 SAMD4BQ5PRF9 694 aaKnown RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 CLEC2AQ6UVW9 174 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 TMPRSS11FQ6ZWK6 438 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 CDK20Q8IZL9 346 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 DEFB107AQ8IZN7 70 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 FITM2Q8N6M3 262 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 ZNF525Q8N782 197 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 CLDN22Q8N7P3 220 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 ZNF519Q8TB69 540 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 DHRS1Q96LJ7 313 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 SORCS2Q96PQ0 1159 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 TSPAN32Q96QS1 320 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 RHNO1Q9BSD3 238 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 MAGEL2Q9UJ55 1249 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 FBXL3Q9UKT7 428 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 FAM32AQ9Y421 112 aaKnown RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 V9GYQ6 96 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 HIVEP2P31629 2446 aa12.78□□□□□ -0.36
USP28-204ENST00000537642 YLPM1P49750 1951 aaKnown RBP12.78□□□□□ -0.36
USP28-204ENST00000537642 A0A096LNT2 108 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 TRBV4-1A0A0J9YWV2 114 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 ARPC2O15144 300 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 GPRIN2O60269 458 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 F12P00748 615 aaPredicted RBP12.77□□□□□ -0.37
USP28-204ENST00000537642 SERPINA5P05154 406 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 NPR2P20594 1047 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 CDAP32320 146 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 DSCR9P59020 149 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 CD47Q08722 323 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 KRT72Q14CN4 511 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 MSMPQ1L6U9 139 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 FGD3Q5JSP0 725 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 SLC25A47Q6Q0C1 308 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 C16orf89Q6UX73 402 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 RRM2BQ7LG56 351 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 SLC16A14Q7RTX9 510 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 SVOPLQ8N434 492 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 PYURFQ96I23 114 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 FAM46AQ96IP4 442 aaKnown RBP12.77□□□□□ -0.37
USP28-204ENST00000537642 DOK1Q99704 481 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 ALG12Q9BV10 488 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 SMURF2Q9HAU4 748 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 TMEM5Q9Y2B1 443 aa12.77□□□□□ -0.37
USP28-204ENST00000537642 VSTM5A8MXK1 200 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 FAM107AO95990 144 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 OMPP47874 163 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 LIMS1P48059 325 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 PPOXP50336 477 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 ERVK-25P63136 954 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 MRPS34P82930 218 aaKnown RBP12.76□□□□□ -0.37
USP28-204ENST00000537642 MXRA7P84157 204 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 SEC23BQ15437 767 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 SLC36A2Q495M3 483 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 ZBED5Q49AG3 693 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 FAM205BPQ63HN1 556 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 TMEM53Q6P2H8 277 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 DPPA2Q7Z7J5 298 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 LRRC18Q8N456 261 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 NSMAFQ92636 917 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 NABP1Q96AH0 204 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 NSMCE2Q96MF7 247 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 VRK1Q99986 396 aaPredicted RBP12.76□□□□□ -0.37
USP28-204ENST00000537642 FUZQ9BT04 418 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 RNF121Q9H920 327 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 SIAEQ9HAT2 523 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 NDE1Q9NXR1 346 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 CMAHPQ9Y471 501 aa12.76□□□□□ -0.37
USP28-204ENST00000537642 A6NIZ1 184 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 MGRN1O60291 552 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 PTP4A3O75365 173 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms