RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ARHGDIGQ99819 225 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 CCT7Q99832 543 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 FOXB1Q99853 325 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 PPA2Q9H2U2 334 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 MRPL46Q9H2W6 279 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 C1orf198Q9H425 327 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 TCF7L2Q9NQB0 619 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 CYSLTR2Q9NS75 346 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 B3GAT1Q9P2W7 334 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 HECTD4Q9Y4D8 3996 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 A8MVM7 634 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 C22orf46C9J442 243 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ENSAO43768 121 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 TOX4O94842 621 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 GSTA2P09210 222 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 VSIG10L2P0DP72 767 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CD28P10747 220 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 MMP9P14780 707 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CPT2P23786 658 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CXCR1P25024 350 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 GTF2E2P29084 291 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 EPHA3P29320 983 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CRHR1P34998 444 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 SOAT1P35610 550 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ANP32AP39687 249 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 PITPNBP48739 271 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ZNF75DP51815 510 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 FOXA1P55317 472 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 PKNOX1P55347 436 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 DR1Q01658 176 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 EGFEM1PQ0D2K5 195 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 BNIP2Q12982 314 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 C1DQ13901 141 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 CHI3L2Q15782 390 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 TBC1D28Q2M2D7 210 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ZMAT1Q5H9K5 638 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ZNF678Q5SXM1 525 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 SPATA46Q5T0L3 261 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 C1orf140Q5VVS0 124 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 AP1ARQ63HQ0 302 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 TYW3Q6IPR3 259 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 SLC27A4Q6P1M0 643 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 C20orf196Q8IYI0 205 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 SPERTQ8NA61 448 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 Q8NFD4 153 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 OR8B3Q8NGG8 313 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 OR4C13Q8NGP0 309 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 OR2T6Q8NHC8 308 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 SFXN5Q8TD22 340 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 OR5P2Q8WZ92 322 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 LHX4Q969G2 390 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CCDC126Q96EE4 140 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 MAP6Q96JE9 813 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 OR8B2Q96RD0 313 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 MRPL57Q9BQC6 102 aaKnown RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 RHOXF2Q9BQY4 288 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ULBP2Q9BZM5 246 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 SEMA6AQ9H2E6 1030 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 MSL2Q9HCI7 577 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 A4GALTQ9NPC4 353 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 B3GAT2Q9NPZ5 323 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 EXD2Q9NVH0 621 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ZNRD1Q9P1U0 126 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CGGBP1Q9UFW8 167 aaPredicted RBP5.32□□□□□ -1.56
CD44-237ENST00000534082 MIOXQ9UGB7 285 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 ZDHHC8Q9ULC8 765 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 STK38LQ9Y2H1 464 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 WDR45Q9Y484 360 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 DNAH10Q8IVF4 4471 aa5.32□□□□□ -1.56
CD44-237ENST00000534082 CFAP73A6NFT4 308 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 DUXAA6NLW8 204 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 HMGB1P1B2RPK0 211 aaPredicted RBP5.31□□□□□ -1.56
CD44-237ENST00000534082 ZNF879B4DU55 563 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 FTCDNL1E5RQL4 147 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 TMEM178BH3BS89 294 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 FAAHO00519 579 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 PHYHO14832 338 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 EIF3HO15372 352 aaKnown RBP eCLIP5.31□□□□□ -1.56
CD44-237ENST00000534082 SEC22BO75396 215 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 AHSA1O95433 338 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 C6orf47O95873 294 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 OPN1SWP03999 348 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 FBP1P09467 338 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 TFPTP0C1Z6 253 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 SBK3P0C264 359 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 UQCRBP14927 111 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 LMO1P25800 156 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 HPCAL1P37235 193 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 LIPAP38571 399 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 KIR2DS4P43632 304 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 SLC35A2P78381 396 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 KCNJ10P78508 379 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 KIAA0040Q15053 153 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 UAP1Q16222 522 aaPredicted RBP5.31□□□□□ -1.56
CD44-237ENST00000534082 ZNF718Q3SXZ3 478 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 THEM4Q5T1C6 240 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 ADAMTSL5Q6ZMM2 481 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 NLRC3Q7RTR2 1065 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 SNX32Q86XE0 403 aa5.31□□□□□ -1.56
CD44-237ENST00000534082 SKA3Q8IX90 412 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms