RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GABRA1P14867 456 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 TNNI1P19237 187 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 CRYGSP22914 178 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 DPP4P27487 766 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 PTGFRP43088 359 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 CCR8P51685 355 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 PPIAP62937 165 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 HERVK_113P63132 956 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 ERVK-8P63133 956 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 OC90Q02509 493 aaPredicted RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 INCA1Q0VD86 236 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 ADIGQ0VDE8 80 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 FASTKQ14296 549 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 PARP6Q2NL67 630 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 ANKDD1AQ495B1 522 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 HIGD2BQ4VC39 106 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 CENPLQ8N0S6 344 aaPredicted RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 ZNF781Q8N8C0 355 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 NFAM1Q8NET5 270 aaPredicted RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 PCNPQ8WW12 178 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 VPS39Q96JC1 886 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 ST6GALNAC5Q9BVH7 336 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 ERVK-6Q9BXR3 956 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 RAB34Q9BZG1 259 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 METTL17Q9H7H0 456 aaPredicted RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 KAT8Q9H7Z6 458 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 CALHM2Q9HA72 323 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 NECAP2Q9NVZ3 263 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 MBD2Q9UBB5 411 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 EIF3KQ9UBQ5 218 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 PURGQ9UJV8 347 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 VANGL2Q9ULK5 521 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 FZR1Q9UM11 496 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 DNAH10Q8IVF4 4471 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 YLPM1P49750 1951 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 CCDC88CQ9P219 2028 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 MYH11P35749 1972 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 IGHV1-45A0A0A0MS14 117 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 FBLL1A6NHQ2 334 aaKnown RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 A8MUI8 341 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 EEF1E1-BLOC1S5C9J1V9 151 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 H0YL77 283 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 H3BTX0 84 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 SDHDO14521 159 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 IMPA2O14732 288 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CFLARO15519 480 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 EEF1E1O43324 174 aaKnown RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 OR2B3O76000 313 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ECDO95905 644 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 TGM6O95932 706 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 IGSF6O95976 241 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 IGKV3-15P01624 115 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 SLC2A3P11169 496 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CXCR2P25025 360 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 UCP1P25874 307 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 LOXP28300 417 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 SOX6P35712 828 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ARFIP1P53367 373 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ZP4Q12836 540 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ORC2Q13416 577 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 EXOSC2Q13868 293 aaKnown RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 NRF1Q16656 503 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 MS4A18Q3C1V0 323 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ANKRD55Q3KP44 614 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 MUC21Q5SSG8 566 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 LCE3AQ5TA76 89 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 DMKNQ6E0U4 476 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 NIPAL3Q6P499 406 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 LEG1Q6P5S2 330 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ATRAIDQ6UW56 229 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ZNF562Q6V9R5 426 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 SHISA6Q6ZSJ9 500 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ZNF720Q7Z2F6 126 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 P4HA3Q7Z4N8 544 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 LHFPL4Q7Z7J7 247 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 TAC4Q86UU9 113 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 OOSP2Q86WS3 158 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CBWD2Q8IUF1 395 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CCDC36Q8IYA8 594 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 TBC1D21Q8IYX1 336 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 OR4F17Q8NGA8 305 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 MUC7Q8TAX7 377 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ADIPOR1Q96A54 375 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 PINX1Q96BK5 328 aaKnown RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 C8orf44Q96CB5 159 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 FAF2Q96CS3 445 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CXorf40BQ96DE9 158 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ZNF641Q96N77 438 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 OR4F4Q96R69 305 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 CRACR2AQ9BSW2 395 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 TPPP3Q9BW30 176 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 RIBC2Q9H4K1 309 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ALG9Q9H6U8 611 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ASB8Q9H765 288 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 MOB1AQ9H8S9 216 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 WDR76Q9H967 626 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ZNF446Q9NWS9 450 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 HRASLS2Q9NWW9 162 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 ATP6V1HQ9UI12 483 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 EMCNQ9ULC0 261 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms