RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CA5BP1Q8WTZ4 195 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 BADQ92934 168 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 CPNE4Q96A23 557 aaPredicted RBP4.01□□□□□ -1.77
CD44-220ENST00000525688 CEP19Q96LK0 163 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 NODALQ96S42 347 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 ULBP2Q9BZM5 246 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 KIR3DX1Q9H7L2 352 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 ANKHQ9HCJ1 492 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 SAMSN1Q9NSI8 373 aaKnown RBP4.01□□□□□ -1.77
CD44-220ENST00000525688 GPATCH2LQ9NWQ4 482 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 USE1Q9NZ43 259 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 CD274Q9NZQ7 290 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 ZNF282Q9UDV7 671 aaPredicted RBP4.01□□□□□ -1.77
CD44-220ENST00000525688 C3orf18Q9UK00 162 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 NXT1Q9UKK6 140 aaKnown RBP4.01□□□□□ -1.77
CD44-220ENST00000525688 MMP24Q9Y5R2 645 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 AUP1Q9Y679 476 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 COLEC10Q9Y6Z7 277 aa4.01□□□□□ -1.77
CD44-220ENST00000525688 RBBP6Q7Z6E9 1792 aaKnown RBP4.01□□□□□ -1.77
CD44-220ENST00000525688 LAMA3Q16787 3333 aa4□□□□□ -1.77
CD44-220ENST00000525688 TRBV4-1A0A0J9YWV2 114 aa4□□□□□ -1.77
CD44-220ENST00000525688 A0A1B0GTI1 187 aa4□□□□□ -1.77
CD44-220ENST00000525688 NKX6-3A6NJ46 265 aa4□□□□□ -1.77
CD44-220ENST00000525688 E5RI56 91 aa4□□□□□ -1.77
CD44-220ENST00000525688 F8VP50 259 aa4□□□□□ -1.77
CD44-220ENST00000525688 H3BMH7 237 aa4□□□□□ -1.77
CD44-220ENST00000525688 SH2D1BO14796 132 aa4□□□□□ -1.77
CD44-220ENST00000525688 TAPBPO15533 448 aa4□□□□□ -1.77
CD44-220ENST00000525688 AQP9O43315 295 aa4□□□□□ -1.77
CD44-220ENST00000525688 RAMP3O60896 148 aa4□□□□□ -1.77
CD44-220ENST00000525688 PSIP1O75475 530 aaKnown RBP4□□□□□ -1.77
CD44-220ENST00000525688 FARS2O95363 451 aaKnown RBP4□□□□□ -1.77
CD44-220ENST00000525688 ACTL6AO96019 429 aa4□□□□□ -1.77
CD44-220ENST00000525688 IFNA14P01570 189 aa4□□□□□ -1.77
CD44-220ENST00000525688 P04436 131 aa4□□□□□ -1.77
CD44-220ENST00000525688 ALDOBP05062 364 aa4□□□□□ -1.77
CD44-220ENST00000525688 FABP1P07148 127 aa4□□□□□ -1.77
CD44-220ENST00000525688 HLA-DMAP28067 261 aa4□□□□□ -1.77
CD44-220ENST00000525688 HTR2CP28335 458 aa4□□□□□ -1.77
CD44-220ENST00000525688 GABRR2P28476 465 aa4□□□□□ -1.77
CD44-220ENST00000525688 KDELR2P33947 212 aa4□□□□□ -1.77
CD44-220ENST00000525688 MAS1LP35410 378 aa4□□□□□ -1.77
CD44-220ENST00000525688 CSKP41240 450 aa4□□□□□ -1.77
CD44-220ENST00000525688 MAGEA5P43359 124 aa4□□□□□ -1.77
CD44-220ENST00000525688 TMEM50BP56557 158 aa4□□□□□ -1.77
CD44-220ENST00000525688 SNAP25P60880 206 aa4□□□□□ -1.77
CD44-220ENST00000525688 ATP6V0D1P61421 351 aa4□□□□□ -1.77
CD44-220ENST00000525688 CDC20Q12834 499 aa4□□□□□ -1.77
CD44-220ENST00000525688 KLRB1Q12918 225 aa4□□□□□ -1.77
CD44-220ENST00000525688 SELENBP1Q13228 472 aa4□□□□□ -1.77
CD44-220ENST00000525688 MED21Q13503 144 aa4□□□□□ -1.77
CD44-220ENST00000525688 ITGA9Q13797 1035 aa4□□□□□ -1.77
CD44-220ENST00000525688 CHI3L2Q15782 390 aa4□□□□□ -1.77
CD44-220ENST00000525688 ZNF77Q15935 545 aa4□□□□□ -1.77
CD44-220ENST00000525688 DUSP5Q16690 384 aa4□□□□□ -1.77
CD44-220ENST00000525688 HLA-BQ31612 363 aa4□□□□□ -1.77
CD44-220ENST00000525688 TCHHL1Q5QJ38 904 aaPredicted RBP4□□□□□ -1.77
CD44-220ENST00000525688 LCE1AQ5T7P2 110 aa4□□□□□ -1.77
CD44-220ENST00000525688 C9orf135Q5VTT2 229 aa4□□□□□ -1.77
CD44-220ENST00000525688 PLPP4Q5VZY2 271 aa4□□□□□ -1.77
CD44-220ENST00000525688 BSPRYQ5W0U4 402 aa4□□□□□ -1.77
CD44-220ENST00000525688 OR5M10Q6IEU7 315 aa4□□□□□ -1.77
CD44-220ENST00000525688 TCEAL6Q6IPX3 200 aa4□□□□□ -1.77
CD44-220ENST00000525688 ADNP2Q6IQ32 1131 aa4□□□□□ -1.77
CD44-220ENST00000525688 SLC27A4Q6P1M0 643 aa4□□□□□ -1.77
CD44-220ENST00000525688 TMEM64Q6YI46 380 aa4□□□□□ -1.77
CD44-220ENST00000525688 NIPA1Q7RTP0 329 aa4□□□□□ -1.77
CD44-220ENST00000525688 HPS6Q86YV9 775 aa4□□□□□ -1.77
CD44-220ENST00000525688 LACC1Q8IV20 430 aa4□□□□□ -1.77
CD44-220ENST00000525688 FUNDC1Q8IVP5 155 aa4□□□□□ -1.77
CD44-220ENST00000525688 TBC1D19Q8N5T2 526 aa4□□□□□ -1.77
CD44-220ENST00000525688 OR2AP1Q8NGE2 309 aa4□□□□□ -1.77
CD44-220ENST00000525688 MRAPQ8TCY5 172 aa4□□□□□ -1.77
CD44-220ENST00000525688 MAGEE2Q8TD90 523 aaPredicted RBP4□□□□□ -1.77
CD44-220ENST00000525688 PSMG2Q969U7 264 aa4□□□□□ -1.77
CD44-220ENST00000525688 BIRC7Q96CA5 298 aa4□□□□□ -1.77
CD44-220ENST00000525688 BPIFA2Q96DR5 249 aa4□□□□□ -1.77
CD44-220ENST00000525688 TIMD4Q96H15 378 aa4□□□□□ -1.77
CD44-220ENST00000525688 PGLYRP2Q96PD5 576 aa4□□□□□ -1.77
CD44-220ENST00000525688 TNFRSF13CQ96RJ3 184 aa4□□□□□ -1.77
CD44-220ENST00000525688 CCDC28BQ9BUN5 200 aa4□□□□□ -1.77
CD44-220ENST00000525688 GPN2Q9H9Y4 310 aaPredicted RBP4□□□□□ -1.77
CD44-220ENST00000525688 NANSQ9NR45 359 aa4□□□□□ -1.77
CD44-220ENST00000525688 SLC17A5Q9NRA2 495 aa4□□□□□ -1.77
CD44-220ENST00000525688 ABCB10Q9NRK6 738 aa4□□□□□ -1.77
CD44-220ENST00000525688 GPR83Q9NYM4 423 aa4□□□□□ -1.77
CD44-220ENST00000525688 IL36GQ9NZH8 169 aa4□□□□□ -1.77
CD44-220ENST00000525688 ZNF580Q9UK33 172 aa4□□□□□ -1.77
CD44-220ENST00000525688 NUP50Q9UKX7 468 aa4□□□□□ -1.77
CD44-220ENST00000525688 ICAM5Q9UMF0 924 aa4□□□□□ -1.77
CD44-220ENST00000525688 PRG3Q9Y2Y8 225 aaPredicted RBP4□□□□□ -1.77
CD44-220ENST00000525688 HYOU1Q9Y4L1 999 aa4□□□□□ -1.77
CD44-220ENST00000525688 TBL2Q9Y4P3 447 aaKnown RBP4□□□□□ -1.77
CD44-220ENST00000525688 FKBP7Q9Y680 259 aa4□□□□□ -1.77
CD44-220ENST00000525688 ASTN1O14525 1302 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 PDE4DIPQ5VU43 2346 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 A0A087WW49 117 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 A0A087WZ39 114 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 TRBV9A0A0B4J1U6 114 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CCDC182A6NF36 153 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms