RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CDV3Q9UKY7 258 aaKnown RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 RARRES3Q9UL19 164 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 CCDC163A0A0D9SF12 145 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ANKRD20A5PA0PJZ0 165 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PEX14O75381 377 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 KHDRBS3O75525 346 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 MT-ND4P03905 459 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 SPARCP09486 303 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PSMB1P20618 241 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 EPHA8P29322 1005 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 KIR3DL2P43630 455 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 EMP2P54851 167 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ADAM8P78325 824 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PUDPQ08623 228 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 TOMM20Q15388 145 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 GSG1Q2KHT4 349 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 WDR38Q5JTN6 314 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 LYSMD4Q5XG99 296 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 OLFML2AQ68BL7 652 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 H1FNTQ75WM6 255 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 IZUMO1Q8IYV9 350 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 OR52I2Q8NH67 350 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 RNF138Q8WVD3 245 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 TSEN15Q8WW01 171 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 PHF21AQ96BD5 680 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 C8orf44Q96CB5 159 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ORAI1Q96D31 301 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PRO3102Q9H379 93 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 AUNIPQ9H7T9 357 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 HRASLSQ9HDD0 168 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PLSCR3Q9NRY6 295 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 TAS2R8Q9NYW2 309 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 C19orf25Q9UFG5 118 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 SUSD2Q9UGT4 822 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 BOLA1Q9Y3E2 137 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 CPAMD8Q8IZJ3 1885 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 VSTM2BA6NLU5 285 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 NPIPA5E9PKD4 350 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 AGRPO00253 132 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ETV2O00321 342 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 SOX1O00570 391 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 XRCC3O43542 346 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 SCRG1O75711 98 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PLGP00747 810 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 CD2P06729 351 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 MYF5P13349 255 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ZNF823P16415 610 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 CDK2P24941 298 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 HOXA6P31267 233 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 FAUP35544 74 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 MAGEB1P43366 347 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 PAPD4Q6PIY7 484 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 DEGS2Q6QHC5 323 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 MAMSTRQ6ZN01 415 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ZNF574Q6ZN55 896 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 DNM1P46Q6ZS02 220 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 SHISA6Q6ZSJ9 500 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 ZNF767PQ75MW2 155 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 UTS2BQ765I0 119 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 KANSL1Q7Z3B3 1105 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 BPHLQ86WA6 291 aaPredicted RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 OR52N5Q8NH56 324 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 CEP76Q8TAP6 659 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 OR6C1Q96RD1 312 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 DIABLOQ9NR28 239 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 MRPL22Q9NWU5 206 aaKnown RBP13.37□□□□□ -0.27
NUP54-217ENST00000514987 CKLFQ9UBR5 152 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 NPIPA1Q9UND3 350 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 RCE1Q9Y256 329 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 SIT1Q9Y3P8 196 aa13.37□□□□□ -0.27
NUP54-217ENST00000514987 XIRP2A4UGR9 3374 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 UNC80Q8N2C7 3258 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 TRAV8-7A0A075B6U6 113 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 YKT6O15498 198 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 ZFAND5O76080 213 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 GLSO94925 669 aaPredicted RBP13.36□□□□□ -0.27
NUP54-217ENST00000514987 TGM6O95932 706 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 MAS1P04201 325 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 SYPP08247 313 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 ADRB1P08588 477 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 CTLA4P16410 223 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 PTGS2P35354 604 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 CCR6P51684 374 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 CLDN12P56749 244 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 FBXW4P57775 412 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 TAS2R20P59543 309 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 EIF2B1Q14232 305 aaKnown RBP13.36□□□□□ -0.27
NUP54-217ENST00000514987 CLPPQ16740 277 aaPredicted RBP13.36□□□□□ -0.27
NUP54-217ENST00000514987 SLC25A53Q5H9E4 307 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 METTL11BQ5VVY1 283 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 CPEB2Q7Z5Q1 589 aaKnown RBP13.36□□□□□ -0.27
NUP54-217ENST00000514987 GIMAP1Q8WWP7 306 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 ASB10Q8WXI3 467 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 NAT6Q93015 286 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 MED30Q96HR3 178 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 AMELYQ99218 206 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 OR11A1Q9GZK7 315 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 C20orf85Q9H1P6 137 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 CHST11Q9NPF2 352 aa13.36□□□□□ -0.27
NUP54-217ENST00000514987 FANCFQ9NPI8 374 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms