RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 GIMAP5Q96F15 307 aa8.79□□□□□ -1
VCAN-210ENST00000513960 CDCA3Q99618 268 aaPredicted RBP8.79□□□□□ -1
VCAN-210ENST00000513960 RPS10P5Q9NQ39 176 aa8.79□□□□□ -1
VCAN-210ENST00000513960 RXFP3Q9NSD7 469 aa8.79□□□□□ -1
VCAN-210ENST00000513960 ZNF337Q9Y3M9 751 aa8.79□□□□□ -1
VCAN-210ENST00000513960 CACNA1IQ9P0X4 2223 aa8.79□□□□□ -1
VCAN-210ENST00000513960 TMEM218A2RU14 115 aa8.79□□□□□ -1
VCAN-210ENST00000513960 METTL21EPA6NDL7 271 aa8.79□□□□□ -1
VCAN-210ENST00000513960 RFPL4AA6NLU0 287 aa8.79□□□□□ -1
VCAN-210ENST00000513960 RFPL4AL1F8VTS6 287 aa8.79□□□□□ -1
VCAN-210ENST00000513960 H0Y8X5 98 aa8.79□□□□□ -1
VCAN-210ENST00000513960 PIN1P1O15428 100 aa8.79□□□□□ -1
VCAN-210ENST00000513960 SNRNP200O75643 2136 aaKnown RBP8.79□□□□□ -1
VCAN-210ENST00000513960 OR4E1P0C645 316 aa8.79□□□□□ -1
VCAN-210ENST00000513960 LSSP48449 732 aa8.79□□□□□ -1
VCAN-210ENST00000513960 ATP1B3P54709 279 aa8.79□□□□□ -1
VCAN-210ENST00000513960 MRPS10P82664 201 aaKnown RBP8.79□□□□□ -1
VCAN-210ENST00000513960 FAM76BQ5HYJ3 339 aa8.79□□□□□ -1
VCAN-210ENST00000513960 PABPC1L2AQ5JQF8 200 aa8.79□□□□□ -1
VCAN-210ENST00000513960 TMPRSS9Q7Z410 1059 aa8.79□□□□□ -1
VCAN-210ENST00000513960 OR6K3Q8NGY3 331 aa8.79□□□□□ -1
VCAN-210ENST00000513960 NT5CQ8TCD5 201 aa8.79□□□□□ -1
VCAN-210ENST00000513960 WBP1Q96G27 269 aa8.79□□□□□ -1
VCAN-210ENST00000513960 CMKLR1Q99788 373 aa8.79□□□□□ -1
VCAN-210ENST00000513960 C20orf24Q9BUV8 137 aa8.79□□□□□ -1
VCAN-210ENST00000513960 PARP12Q9H0J9 701 aaKnown RBP8.79□□□□□ -1
VCAN-210ENST00000513960 FBRSQ9HAH7 460 aa8.79□□□□□ -1
VCAN-210ENST00000513960 MKKSQ9NPJ1 570 aaPredicted RBP8.79□□□□□ -1
VCAN-210ENST00000513960 EXOSC3Q9NQT5 275 aaKnown RBP8.79□□□□□ -1
VCAN-210ENST00000513960 LAMP5Q9UJQ1 280 aa8.79□□□□□ -1
VCAN-210ENST00000513960 SIGLEC7Q9Y286 467 aa8.79□□□□□ -1
VCAN-210ENST00000513960 DCDC2BA2VCK2 349 aa8.78□□□□□ -1
VCAN-210ENST00000513960 ABCD4O14678 606 aa8.78□□□□□ -1
VCAN-210ENST00000513960 EIF3GO75821 320 aaKnown RBP eCLIP8.78□□□□□ -1
VCAN-210ENST00000513960 MAP3K8P41279 467 aa8.78□□□□□ -1
VCAN-210ENST00000513960 NPBWR1P48145 328 aa8.78□□□□□ -1
VCAN-210ENST00000513960 POU3F4P49335 361 aa8.78□□□□□ -1
VCAN-210ENST00000513960 CEBPGP53567 150 aa8.78□□□□□ -1
VCAN-210ENST00000513960 DCST2Q5T1A1 773 aa8.78□□□□□ -1
VCAN-210ENST00000513960 RPL13AP3Q6NVV1 102 aa8.78□□□□□ -1
VCAN-210ENST00000513960 C3orf33Q6P1S2 294 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TMEM205Q6UW68 189 aa8.78□□□□□ -1
VCAN-210ENST00000513960 BPIFB2Q8N4F0 458 aa8.78□□□□□ -1
VCAN-210ENST00000513960 PLPP7Q8NBV4 271 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SLC19A3Q9BZV2 496 aa8.78□□□□□ -1
VCAN-210ENST00000513960 RASL12Q9NYN1 266 aa8.78□□□□□ -1
VCAN-210ENST00000513960 GSKIPQ9P0R6 139 aa8.78□□□□□ -1
VCAN-210ENST00000513960 DAPP1Q9UN19 280 aa8.78□□□□□ -1
VCAN-210ENST00000513960 C2orf16Q68DN1 1984 aa8.78□□□□□ -1
VCAN-210ENST00000513960 FITM1A5D6W6 292 aa8.78□□□□□ -1
VCAN-210ENST00000513960 MCIDASD6RGH6 385 aa8.78□□□□□ -1
VCAN-210ENST00000513960 OR10H2O60403 315 aa8.78□□□□□ -1
VCAN-210ENST00000513960 ZNF432O94892 652 aa8.78□□□□□ -1
VCAN-210ENST00000513960 OR2A4O95047 310 aa8.78□□□□□ -1
VCAN-210ENST00000513960 OR6A2O95222 327 aa8.78□□□□□ -1
VCAN-210ENST00000513960 IFNA6P05013 189 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SNRNP70P08621 437 aaKnown RBP8.78□□□□□ -1
VCAN-210ENST00000513960 CPMP14384 443 aa8.78□□□□□ -1
VCAN-210ENST00000513960 AVPR2P30518 371 aa8.78□□□□□ -1
VCAN-210ENST00000513960 EFNB2P52799 333 aa8.78□□□□□ -1
VCAN-210ENST00000513960 S100A10P60903 97 aa8.78□□□□□ -1
VCAN-210ENST00000513960 RUNX2Q13950 521 aa8.78□□□□□ -1
VCAN-210ENST00000513960 ARHGAP11BQ3KRB8 267 aa8.78□□□□□ -1
VCAN-210ENST00000513960 PLEKHN1Q494U1 663 aaPredicted RBP8.78□□□□□ -1
VCAN-210ENST00000513960 STPG1Q5TH74 334 aa8.78□□□□□ -1
VCAN-210ENST00000513960 OR10K2Q6IF99 312 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TAF8Q7Z7C8 310 aa8.78□□□□□ -1
VCAN-210ENST00000513960 RXFP4Q8TDU9 374 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SCARF2Q96GP6 870 aaPredicted RBP8.78□□□□□ -1
VCAN-210ENST00000513960 OR2A7Q96R45 310 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SDF2Q99470 211 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TMPRSS13Q9BYE2 586 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SYT4Q9H2B2 425 aa8.78□□□□□ -1
VCAN-210ENST00000513960 A0A1B0GWA3 101 aa8.78□□□□□ -1
VCAN-210ENST00000513960 OR6C76A6NM76 312 aa8.78□□□□□ -1
VCAN-210ENST00000513960 CTDSPLO15194 276 aa8.78□□□□□ -1
VCAN-210ENST00000513960 SNAPC5O75971 98 aa8.78□□□□□ -1
VCAN-210ENST00000513960 NDUFB2O95178 105 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TACSTD2P09758 323 aa8.78□□□□□ -1
VCAN-210ENST00000513960 CD53P19397 219 aa8.78□□□□□ -1
VCAN-210ENST00000513960 POLR2GP62487 172 aaKnown RBP eCLIP8.78□□□□□ -1
VCAN-210ENST00000513960 PPIAP62937 165 aaKnown RBP8.78□□□□□ -1
VCAN-210ENST00000513960 C9orf50Q5SZB4 431 aa8.78□□□□□ -1
VCAN-210ENST00000513960 NAA40Q86UY6 237 aa8.78□□□□□ -1
VCAN-210ENST00000513960 C15orf40Q8WUR7 153 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TIMP4Q99727 224 aa8.78□□□□□ -1
VCAN-210ENST00000513960 ZFP57Q9NU63 452 aa8.78□□□□□ -1
VCAN-210ENST00000513960 TAS2R8Q9NYW2 309 aa8.78□□□□□ -1
VCAN-210ENST00000513960 ZIC2O95409 532 aaPredicted RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 DBIP07108 87 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 MST1P26927 711 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 DPP4P27487 766 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 RBM34P42696 430 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 PTGFRP43088 359 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 PGDP52209 483 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 ILF3Q12906 894 aaKnown RBP eCLIP8.77□□□□□ -1.01
VCAN-210ENST00000513960 NKAPLQ5M9Q1 402 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 LIPNQ5VXI9 398 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GALNTL5Q7Z4T8 443 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 DND1Q8IYX4 353 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms