RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RPUSD3Q6P087 351 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM71Q6P5X7 295 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF383Q8NA42 475 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 RBM14Q96PK6 669 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PCYT2Q99447 389 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 GSX1Q9H4S2 264 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PCDHB10Q9UN67 800 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 IER3IP1Q9Y5U9 82 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF816-ZNF321PA0A0X1KG74 233 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 B4E171 279 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ARNTLO00327 626 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF354AO60765 605 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 NDUFB2O95178 105 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SNRPBP14678 240 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 IL1RNP18510 177 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PMCHP20382 165 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 MLF1P58340 268 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 BAXQ07812 192 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 FOXC1Q12948 553 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF805Q5CZA5 627 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF684Q5T5D7 378 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR2A2Q6IF42 318 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PIANPQ8IYJ0 282 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ARFGAP1Q8N6T3 406 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR52R1Q8NGF1 315 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM239Q8WW34 195 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF566Q969W8 418 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 C4orf36Q96KX1 117 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 METTL9Q9H1A3 318 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ANTXRLA6NF34 631 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PTHP01270 115 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 AKR1C3P42330 323 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 MAJINQ3KP22 176 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 DCAF12Q5T6F0 453 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 AGBL5Q8NDL9 886 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 GNPNAT1Q96EK6 184 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 SORCS2Q96PQ0 1159 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 OR1F2PQ96R84 312 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PAAF1Q9BRP4 392 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PTDSS2Q9BVG9 487 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PLK3Q9H4B4 646 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 EGLN3Q9H6Z9 239 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TXNRD2Q9NNW7 524 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 NRAPQ86VF7 1730 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 C2orf72A6NCS6 295 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 CD46P15529 392 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 RING1Q06587 406 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PLCXD2Q0VAA5 305 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 Q6ZTK2 550 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM123Q8N131 208 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 OR8J2Q8NGG1 315 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 DAZLQ92904 295 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 CMBLQ96DG6 245 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM43Q9BTV4 400 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 SGPP1Q9BX95 441 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 CPEB1Q9BZB8 566 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 RHOFQ9HBH0 211 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ING1Q9UK53 422 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 MMP24Q9Y5R2 645 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 HELTA6NFD8 242 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ACOD1A6NK06 481 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 B4DXG7 233 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 J3KTA2 159 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PLRG1O43660 514 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ZIC2O95409 532 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ATP1B1P05026 303 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 SCG5P05408 212 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 DPP4P27487 766 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 MTNR1BP49286 362 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 EMP2P54851 167 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TIGITQ495A1 244 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 HENMT1Q5T8I9 393 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 MAML2Q8IZL2 1156 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM217Q8N7C4 229 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 FAM71F1Q96KD3 344 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 LYSMD1Q96S90 227 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ACPTQ9BZG2 426 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ISYNA1Q9NPH2 558 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ASCC3Q8N3C0 2202 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 XKRY2A2RUG3 117 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 A6NDN8 102 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF814B7Z6K7 855 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 GPR32O75388 356 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 DEDDO75618 318 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 RGS11O94810 467 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 SNAI1O95863 264 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 MSX1P28360 303 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 PLP1P60201 277 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 CDONQ4KMG0 1287 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 LEMD1Q68G75 181 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 RNF111Q6ZNA4 994 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM182Q6ZP80 229 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM174Q8WUU8 243 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 TSLPQ969D9 159 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 ANKRD9Q96BM1 317 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 HAPLN2Q9GZV7 340 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 FLVCR2Q9UPI3 526 aa8.07□□□□□ -1.12
LIMCH1-218ENST00000513024 A6NLC8 198 aa8.06□□□□□ -1.12
LIMCH1-218ENST00000513024 GABRR3A8MPY1 467 aa8.06□□□□□ -1.12
LIMCH1-218ENST00000513024 TK1P04183 234 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms