RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ADAMTS9Q9P2N4 1935 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 EP300Q09472 2414 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 FER1L5A0AVI2 2057 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 IDSB3KWA1 339 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 ACOT7O00154 380 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 PSMD9O00233 223 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 DCTN6O00399 190 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 HOXA6P31267 233 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 GDNFP39905 211 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 AGFG1P52594 562 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 RIDAP52758 137 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 RIPPLY1Q0D2K3 151 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SNTB2Q13425 540 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC17A1Q14916 467 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 ELFN2Q5R3F8 820 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 TMEM69Q5SWH9 247 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 BCL2L15Q5TBC7 163 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 FGD2Q7Z6J4 655 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SYT9Q86SS6 491 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 BPHLQ86WA6 291 aaPredicted RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 MFSD8Q8NHS3 518 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 RNF128Q8TEB7 428 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 DUSP19Q8WTR2 217 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 FCAMRQ8WWV6 532 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 NXPE2Q96DL1 559 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 CFAP54Q96N23 3096 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SMAD5Q99717 465 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 TMEM246Q9BRR3 403 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 TSPAN10Q9H1Z9 355 aaPredicted RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 EMC7Q9NPA0 242 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 CDV3Q9UKY7 258 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 ING4Q9UNL4 249 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 IGLV1-36A0A0B4J1U3 117 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC22A23A1A5C7 686 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 C4orf47A7E2U8 309 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 ZNF593O00488 134 aaPredicted RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 GMFGO60234 142 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SCRG1O75711 98 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 CD2P06729 351 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 H2AFB2P0C5Z0 115 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 PUDPQ08623 228 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 TOMM20Q15388 145 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SHBQ15464 509 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 TEX30Q5JUR7 227 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 PWWP2BQ6NUJ5 590 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 FCRLAQ7L513 359 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 LUZP2Q86TE4 346 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 LRRTM1Q86UE6 522 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 NFAM1Q8NET5 270 aaPredicted RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 SYNPRQ8TBG9 265 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC22A8Q8TCC7 542 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 TSEN15Q8WW01 171 aaKnown RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 HSD17B8Q92506 261 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC25A38Q96DW6 304 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 ZNF587Q96SQ5 575 aaPredicted RBP10.8□□□□□ -0.68
NUP54-202ENST00000502850 GFI1Q99684 422 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC17A5Q9NRA2 495 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 SLC22A11Q9NSA0 550 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 CKLFQ9UBR5 152 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 STEAP1Q9UHE8 339 aa10.8□□□□□ -0.68
NUP54-202ENST00000502850 ABCA7Q8IZY2 2146 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 OTOGLQ3ZCN5 2332 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 A0A0A6YYJ9 748 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 A0A0B4J203 849 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 A0A1B0GVC2 190 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 A0A1B0GVI7 797 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 A6NIN4 97 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 VSTM2BA6NLU5 285 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 FTCDNL1E5RQL4 147 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 NPIPA5E9PKD4 350 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ETV2O00321 342 aaPredicted RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 SLC16A7O60669 478 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ZFAND5O76080 213 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 SPARCP09486 303 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ANXA3P12429 323 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 TDGF1P13385 188 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 GIFP27352 417 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 CCKBRP32239 447 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 FAUP35544 74 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 SRP9P49458 86 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 CAPZA1P52907 286 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 EMP2P54851 167 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ADAM8P78325 824 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 MEP1BQ16820 701 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 PAPD4Q6PIY7 484 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 HDDC2Q7Z4H3 204 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 KRT77Q7Z794 578 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 TMPRSS12Q86WS5 348 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 DND1Q8IYX4 353 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 APCDD1LQ8NCL9 501 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 RNF138Q8WVD3 245 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 HGDQ93099 445 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 MCHR2Q969V1 340 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 TMEM106AQ96A25 262 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ZNF524Q96C55 264 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 OR6C1Q96RD1 312 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 BEX2Q9BXY8 128 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 POTEKPQ9BYX7 375 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 OR51J1Q9H342 316 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms