RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CDK6Q00534 326 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SLC36A2Q495M3 483 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 MIDNQ504T8 468 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SPATA46Q5T0L3 261 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SWT1Q5T5J6 900 aaKnown RBP12.45□□□□□ -0.42
TRAF4-212ENST00000498540 REEP3Q6NUK4 255 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SLC16A14Q7RTX9 510 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 KRT73Q86Y46 540 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 BCL6BQ8N143 479 aaPredicted RBP12.45□□□□□ -0.42
TRAF4-212ENST00000498540 OR1J1Q8NGS3 322 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 TAF15Q92804 592 aaKnown RBP eCLIP12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SLC25A44Q96H78 314 aaPredicted RBP12.45□□□□□ -0.42
TRAF4-212ENST00000498540 OR52B2Q96RD2 323 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 SPATA5L1Q9BVQ7 753 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 MMP26Q9NRE1 261 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 TAS2R5Q9NYW4 299 aa12.45□□□□□ -0.42
TRAF4-212ENST00000498540 LEF1Q9UJU2 399 aaPredicted RBP12.45□□□□□ -0.42
TRAF4-212ENST00000498540 ZSCAN5BA6NJL1 495 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ENTPD5O75356 428 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 UBOX5O94941 541 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 OR6A2O95222 327 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 MMP7P09237 267 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 QDPRP09417 244 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 AQP1P29972 269 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 RBMXP38159 391 aaKnown RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 MPV17P39210 176 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 MMP15P51511 669 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ZNF74Q16587 644 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 MOGQ16653 247 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 SPRNQ5BIV9 151 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ARMCX4Q5H9R4 360 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 KLF17Q5JT82 389 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 FAM209AQ5JX71 171 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 CEP85LQ5SZL2 805 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 LINC00114Q6XXX2 140 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 DPPA2Q7Z7J5 298 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 RANBP3LQ86VV4 465 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ZNF101Q8IZC7 436 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 LRRC17Q8N6Y2 441 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 GOLGA6L1Q8N7Z2 621 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ANKRD42Q8N9B4 389 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 RBM15BQ8NDT2 890 aaKnown RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 CPEB3Q8NE35 698 aaKnown RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 OR1J2Q8NGS2 313 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 IPCEF1Q8WWN9 437 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 POP5Q969H6 163 aaKnown RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 ZNF48Q96MX3 618 aaPredicted RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 THAP1Q9NVV9 213 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 DCAF16Q9NXF7 216 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 SLAMF8Q9P0V8 285 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 PURGQ9UJV8 347 aaKnown RBP12.44□□□□□ -0.42
TRAF4-212ENST00000498540 NUP50Q9UKX7 468 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 TRIM33Q9UPN9 1127 aa12.44□□□□□ -0.42
TRAF4-212ENST00000498540 PPIAL4EA0A075B759 164 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PPIAL4CA0A0B4J2A2 164 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 IQCMA0A1B0GVH7 501 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PPIAL4DF5H284 164 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 M0R3H8 397 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 UBDO15205 165 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 RNF13O43567 381 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 CH25HO95992 272 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PTHP01270 115 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PPIAL4FP0DN26 164 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 WNT5AP41221 380 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 WDR4P57081 412 aaKnown RBP12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PLP2Q04941 152 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 SCARB2Q14108 478 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 TNFAIP8L3Q5GJ75 292 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 HHATQ5VTY9 493 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 TREML1Q86YW5 311 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 LRRC18Q8N456 261 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 ST7LQ8TDW4 575 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 GEMIN6Q8WXD5 167 aaKnown RBP12.43□□□□□ -0.42
TRAF4-212ENST00000498540 TRIM44Q96DX7 344 aaPredicted RBP12.43□□□□□ -0.42
TRAF4-212ENST00000498540 ZNF347Q96SE7 839 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 MCHR1Q99705 422 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 LRMDAQ9H2I8 198 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 CENPHQ9H3R5 247 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 IKZF5Q9H5V7 419 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 ZMAT3Q9HA38 289 aaKnown RBP12.43□□□□□ -0.42
TRAF4-212ENST00000498540 SLC13A4Q9UKG4 626 aa12.43□□□□□ -0.42
TRAF4-212ENST00000498540 PRORSD1PA6NEY8 169 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 KPNA4O00629 521 aaPredicted RBP12.42□□□□□ -0.42
TRAF4-212ENST00000498540 CHP2O43745 196 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 FOXH1O75593 365 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 THY1P04216 161 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 RNASE1P07998 156 aaKnown RBP12.42□□□□□ -0.42
TRAF4-212ENST00000498540 CCNOP22674 350 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 APLNRP35414 380 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 ATP4BP51164 291 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 HSF2Q03933 536 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 BAMBIQ13145 260 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 NPTX1Q15818 432 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 HIST3H3Q16695 136 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 NRN1LQ496H8 165 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 PABPC1L2AQ5JQF8 200 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 THEM4Q5T1C6 240 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 LRIF1Q5T3J3 769 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 ARMC8Q8IUR7 673 aa12.42□□□□□ -0.42
TRAF4-212ENST00000498540 SMYD1Q8NB12 490 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 191.1 ms