RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 EMC4Q5J8M3 183 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ARSKQ6UWY0 536 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KANSL1Q7Z3B3 1105 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PRSS35Q8N3Z0 413 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FTMTQ8N4E7 242 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SPICQ8N5J4 248 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR51A4Q8NGJ6 313 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 THEM6Q8WUY1 208 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 AMELYQ99218 206 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ELF4Q99607 663 aaPredicted RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TAS2R5Q9NYW4 299 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF175Q9Y473 711 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PCDH15Q96QU1 1955 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LDOC1O95751 146 aaPredicted RBP14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MAS1P04201 325 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ATXN8OSP0DMR3 200 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IFNGR1P15260 489 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ANXA7P20073 488 aaKnown RBP14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ITPKBP27987 946 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TACR3P29371 465 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CSRP2Q16527 193 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CLLU1Q5K131 121 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EEF1A1P5Q5VTE0 462 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 DPY19L4Q7Z388 723 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TMPRSS12Q86WS5 348 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 UXS1Q8NBZ7 420 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR6N2Q8NGY6 317 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CEP76Q8TAP6 659 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PCNPQ8WW12 178 aaKnown RBP14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 WDR89Q96FK6 387 aaPredicted RBP14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CHIAQ9BZP6 476 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ADAM19Q9H013 955 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LANCL2Q9NS86 450 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MGAT4CQ9UBM8 478 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LAMP5Q9UJQ1 280 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IKZF2Q9UKS7 526 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ALPK2Q86TB3 2170 aa14.55□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IGHV1OR15-9A0A0B4J2B8 117 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SCDO00767 359 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SCO1O75880 301 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 NDUFB6O95139 128 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IFNA7P01567 189 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CPN1P15169 458 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 HPGDP15428 266 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KIR3DL2P43630 455 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PPICP45877 212 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CAPZBP47756 277 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 DHODHQ02127 395 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SERTAD2Q14140 314 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TCTE1Q5JU00 501 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OIT3Q8WWZ8 545 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KLHL15Q96M94 604 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CLEC4MQ9H2X3 399 aaPredicted RBP14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PLCL2Q9UPR0 1127 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IGLV3-19P01714 112 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ALDOBP05062 364 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IL5P05113 134 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CD1CP29017 333 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EGR3Q06889 387 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IGSF11Q5DX21 431 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF626Q68DY1 528 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LRRN1Q6UXK5 716 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C1orf210Q8IVY1 113 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GLB1L2Q8IW92 636 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PELOQ9BRX2 385 aaKnown RBP14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ULBP3Q9BZM4 244 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SYT4Q9H2B2 425 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 UBQLN2Q9UHD9 624 aa14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ING1Q9UK53 422 aaPredicted RBP14.54□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR2M5A3KFT3 312 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C17orf51A8MQB3 221 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 A8MUA0 341 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 H3BSH0 61 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LAMTOR5O43504 91 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 WISP1O95388 367 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PROS1P07225 676 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TSPAN5P62079 268 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 POLR2GP62487 172 aaKnown RBP eCLIP14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GRK1Q15835 563 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LRRC69Q6ZNQ3 347 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 NUP54Q7Z3B4 507 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 BIVMQ86UB2 503 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MCHR2Q969V1 340 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TMEM106AQ96A25 262 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MNTQ99583 582 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 USB1Q9BQ65 265 aaKnown RBP14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PNO1Q9NRX1 252 aaKnown RBP14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 STEAP1Q9UHE8 339 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZFHX2Q9C0A1 2572 aaPredicted RBP14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PCNX3Q9H6A9 2034 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IGHV5-51A0A0C4DH38 117 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PLSCR5A0PG75 271 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CIB4A0PJX0 185 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ANXA2P2A6NMY6 339 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 YKT6O15498 198 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 XRCC3O43542 346 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF432O94892 652 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RENP00797 406 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 BGLAPP02818 100 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ANXA2P07355 339 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms