RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MESP2Q0VG99 397 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ZNF234Q14588 700 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 RAB11BQ15907 218 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ZNF528Q3MIS6 628 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 RAB12Q6IQ22 244 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 LURAP1LQ8IV03 231 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 BOLLQ8N9W6 283 aaKnown RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 OR1J2Q8NGS2 313 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 CDX2Q99626 313 aaPredicted RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 ZNF629Q9UEG4 869 aaPredicted RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 OR10H1Q9Y4A9 318 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 MTCH2Q9Y6C9 303 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 SPACA6W5XKT8 324 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ARPC4-TTLL3A0A0A6YYG9 625 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 OR4C45A6NMZ5 311 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 OR2AT4A6NND4 320 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 NUDT19A8MXV4 375 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 F5H0A9 414 aaPredicted RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 NKX2-2O95096 273 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SNAPINO95295 136 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 AMY2AP04746 511 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 RASGEF1BQ0VAM2 473 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 DHRS2Q13268 280 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 GUCA2BQ16661 112 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 PRICKLE4Q2TBC4 344 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 LRRC37A5PQ49AS3 106 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 CBLN2Q8IUK8 224 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 INO80EQ8NBZ0 244 aaPredicted RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 OR2G2Q8NGZ5 317 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 GPX7Q96SL4 187 aaPredicted RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 ATG5Q9H1Y0 275 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 LAMP5Q9UJQ1 280 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 KLHDC2Q9Y2U9 406 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SMIM10L1P0DMW3 83 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 CASRP41180 1078 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SNRPNP63162 240 aaKnown RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 BLOC1S1P78537 153 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 GXYLT1Q4G148 440 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 BEX5Q5H9J7 111 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 ABHD13Q7L211 337 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 THAP6Q8TBB0 222 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SUSD6Q92537 303 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 FAM3DQ96BQ1 224 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SMIM10Q96HG1 83 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 SLCO5A1Q9H2Y9 848 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 KIR3DX1Q9H7L2 352 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 CARHSP1Q9Y2V2 147 aaKnown RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 HEBP2Q9Y5Z4 205 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 COLEC10Q9Y6Z7 277 aa12.06□□□□□ -0.48
USP40-214ENST00000483519 MUC22E2RYF6 1773 aaPredicted RBP12.06□□□□□ -0.48
USP40-214ENST00000483519 A0A087WUJ7 227 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 SLC17A2O00624 439 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 P2RX6O15547 441 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 FGF17O60258 216 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 DNAJB6O75190 326 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 HLA-AP01891 365 aaKnown RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 IFI6P09912 130 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 FOSL2P15408 326 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ADCYAP1P18509 176 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 RPS4XP62701 263 aaKnown RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 DCDP81605 110 aaKnown RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 TSC22D1Q15714 1073 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 C2orf76Q3KRA6 126 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ATPAF1Q5TC12 328 aaPredicted RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 ARHGAP40Q5TG30 622 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 C3orf33Q6P1S2 294 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 Q7L0L9 218 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 NDUFAF7Q7L592 441 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 CDC20BQ86Y33 519 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 PPP1R1CQ8WVI7 109 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 TSEN15Q8WW01 171 aaKnown RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 ARL11Q969Q4 196 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 MCHR2Q969V1 340 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 LYRM4Q9HD34 91 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 TRPM6Q9BX84 2022 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 TBC1D3IA0A087WXS9 549 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 HSPB2A8KAH6 182 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ITGA5P08648 1049 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 CDKN2AP42771 156 aaKnown RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 SERTAD2Q14140 314 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ATXN7L3Q14CW9 347 aaPredicted RBP12.05□□□□□ -0.48
USP40-214ENST00000483519 HSPB2Q16082 182 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 C10orf91Q5T1B1 145 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 TMEM164Q5U3C3 297 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 PRAMEF17Q5VTA0 474 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ZNF813Q6ZN06 617 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ETFBKMTQ8IXQ9 262 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 OR4E2Q8NGC2 313 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 LCN9Q8WX39 176 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 SMARCD2Q92925 531 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ZBTB8AQ96BR9 441 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 MNTQ99583 582 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 C12orf49Q9H741 205 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 ZFP57Q9NU63 452 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 DEC1Q9P2X7 70 aa12.05□□□□□ -0.48
USP40-214ENST00000483519 HIDE1A8MVS5 230 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 FGF16O43320 207 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 NARSO43776 548 aaKnown RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 RDH16O75452 317 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms