RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CECR9P0C854 216 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 HLA-DOBP13765 273 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CBR1P16152 277 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 AHCYP23526 432 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PCSK6P29122 969 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 GZMMP51124 257 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 SNRPD2P62316 118 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 TUBA1BP68363 451 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 TUBA4AP68366 448 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ARF1P84077 181 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 NAAAQ02083 359 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 POU3F1Q03052 451 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 NPTX1Q15818 432 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CEACAM16Q2WEN9 425 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CARD17Q5XLA6 110 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 REP15Q6BDI9 236 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ERICH5Q6P6B1 374 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CLEC2AQ6UVW9 174 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 DNM1P46Q6ZS02 220 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 TUBA1AQ71U36 451 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CCDC80Q76M96 950 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PXKQ7Z7A4 578 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CCDC36Q8IYA8 594 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 C20orf196Q8IYI0 205 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM123Q8N131 208 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PCYOX1LQ8NBM8 494 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 MAPK1IP1LQ8NDC0 245 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 OR5J2Q8NH18 312 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 VANGL1Q8TAA9 524 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ADAMTS16Q8TE57 1224 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PROX1Q92786 737 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 TAMM41Q96BW9 452 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 MPP4Q96JB8 637 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 LRR1Q96L50 414 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 MYCBPQ99417 103 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ECSITQ9BQ95 431 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC19A3Q9BZV2 496 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PCDHAC1Q9H158 963 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CDIP1Q9H305 208 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 NELFAQ9H3P2 528 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 YY1AP1Q9H869 796 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 SAR1AQ9NR31 198 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CA10Q9NS85 328 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 GID8Q9NWU2 228 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC7A7Q9UM01 511 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 RTTNQ86VV8 2226 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 LRRN3E7EW58 273 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 C11orf98E9PRG8 122 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 FXYD1O00168 92 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC22A2O15244 555 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 SERPINI2O75830 405 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 PDE5AO76074 875 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CH25HO95992 272 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 IFNA14P01570 189 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 HIST1H2ABP04908 130 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ADORA3P0DMS8 318 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ARR3P36575 388 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 SERPINF1P36955 418 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CAPZA2P47755 286 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 EFNA4P52798 201 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CRYBA2P53672 197 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 BIDP55957 195 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 SF3A3Q12874 501 aaKnown RBP eCLIP5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 NPRL3Q12980 569 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF74Q16587 644 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 RABL3Q5HYI8 236 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 PHYHD1Q5SRE7 291 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CGB2Q6NT52 195 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 WDR88Q6ZMY6 472 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 HIST3H2AQ7L7L0 130 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CALHM3Q86XJ0 350 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 RBM45Q8IUH3 476 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 NUP37Q8NFH4 326 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 IL17RDQ8NFM7 739 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 OR10H5Q8NGA6 315 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 OR4F15Q8NGB8 312 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 OR4D11Q8NGI4 311 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 OR6N1Q8NGY5 312 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 HTRA1Q92743 480 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 HIST1H2ACQ93077 130 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 FBXO17Q96EF6 278 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 TXNDC15Q96J42 360 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 EMC6Q9BV81 110 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ULBP2Q9BZM5 246 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 POLR2J2Q9GZM3 115 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 POLR2J3Q9H1A7 115 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CCDC134Q9H6E4 229 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 NANSQ9NR45 359 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF446Q9NWS9 450 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 MED29Q9NX70 200 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ASH2LQ9UBL3 628 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF229Q9UJW7 825 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 BAG5Q9UL15 447 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 USP22Q9UPT9 525 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 POFUT2Q9Y2G5 429 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 COA3Q9Y2R0 106 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 SH3GLB1Q9Y371 365 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 FKBP7Q9Y680 259 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 CAPN7Q9Y6W3 813 aa5.89□□□□□ -1.47
CCDC88A-213ENST00000476903 IGHV4-30-2A0A087WSY4 118 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms