RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 DUSP13Q9UII6 198 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 CDC42EP3Q9UKI2 254 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 UGT2A1Q9Y4X1 527 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 CAPN7Q9Y6W3 813 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 ELOVL7A1L3X0 281 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 RNF212BA8MTL3 300 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 MCIDASD6RGH6 385 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 M0R233 179 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 FFAR1O14842 300 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 SYNGR3O43761 229 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 NCR1O76036 304 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 TGFAP01135 160 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 MMP7P09237 267 aaPredicted RBP14.3□□□□□ -0.12
USP40-212ENST00000473191 MAKP20794 623 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 SELENOWP63302 87 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 GALK2Q01415 458 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 TOP3AQ13472 1001 aaPredicted RBP14.3□□□□□ -0.12
USP40-212ENST00000473191 FHL1Q13642 323 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 CCNIQ14094 377 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 MAPRE2Q15555 327 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 FAM120AOSQ5T036 256 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 FAM166AQ6J272 317 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 TREML1Q86YW5 311 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 PCYOX1LQ8NBM8 494 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 RBM15BQ8NDT2 890 aaKnown RBP14.3□□□□□ -0.12
USP40-212ENST00000473191 CPEB3Q8NE35 698 aaKnown RBP14.3□□□□□ -0.12
USP40-212ENST00000473191 SLC30A7Q8NEW0 376 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 LIPHQ8WWY8 451 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 NSMAFQ92636 917 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 GTF3AQ92664 365 aaKnown RBP14.3□□□□□ -0.12
USP40-212ENST00000473191 YIPF5Q969M3 257 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 NABP1Q96AH0 204 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 SHARPINQ9H0F6 387 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 RNF121Q9H920 327 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 GID8Q9NWU2 228 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 KCNS2Q9ULS6 477 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 MED31Q9Y3C7 131 aa14.3□□□□□ -0.12
USP40-212ENST00000473191 A0A1W2PRG6 482 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 VSTM5A8MXK1 200 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 NME4O00746 187 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 PHF1O43189 567 aaPredicted RBP14.29□□□□□ -0.12
USP40-212ENST00000473191 TACSTD2P09758 323 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 MAGEB1P43366 347 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 ZNF133P52736 654 aaPredicted RBP14.29□□□□□ -0.12
USP40-212ENST00000473191 TBPL2Q6SJ96 375 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 SLC16A14Q7RTX9 510 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 TSEN54Q7Z6J9 526 aaKnown RBP14.29□□□□□ -0.12
USP40-212ENST00000473191 LRRC75AQ8NAA5 344 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 SPATA3Q8NHX4 192 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 PRRC1Q96M27 445 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 DENND2DQ9H6A0 471 aaPredicted RBP14.29□□□□□ -0.12
USP40-212ENST00000473191 CCDC134Q9H6E4 229 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 NARFLQ9H6Q4 476 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 SLC7A8Q9UHI5 535 aa14.29□□□□□ -0.12
USP40-212ENST00000473191 ZNF346Q9UL40 294 aaKnown RBP14.29□□□□□ -0.12
USP40-212ENST00000473191 TRAV27A0A087WT01 109 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 MGRN1O60291 552 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 IFNA2P01563 188 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 COX4I1P13073 169 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 IFI30P13284 250 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 APEX1P27695 318 aaKnown RBP14.28□□□□□ -0.12
USP40-212ENST00000473191 EVX1P49640 407 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 LIPEQ05469 1076 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 HNRNPA0Q13151 305 aaKnown RBP14.28□□□□□ -0.12
USP40-212ENST00000473191 C10orf128Q5T292 105 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 C8orf82Q6P1X6 216 aaPredicted RBP14.28□□□□□ -0.12
USP40-212ENST00000473191 NRMQ8IXM6 262 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 BPIFA2Q96DR5 249 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 POLR2J2Q9GZM3 115 aaKnown RBP14.28□□□□□ -0.12
USP40-212ENST00000473191 POLR2J3Q9H1A7 115 aaKnown RBP14.28□□□□□ -0.12
USP40-212ENST00000473191 SPEF1Q9Y4P9 236 aa14.28□□□□□ -0.12
USP40-212ENST00000473191 PRSS23O95084 383 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 FARS2O95363 451 aaKnown RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 IGF2P01344 180 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 IFNA14P01570 189 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 SCG5P05408 212 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 NCK1P16333 377 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 ZNF26P17031 533 aaPredicted RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 ZNF32P17041 273 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 RBMXP38159 391 aaKnown RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 DAP3P51398 398 aaKnown RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 SLC7A2P52569 658 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 CD47Q08722 323 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 ST3GAL3Q11203 375 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 KRTAP24-1Q3LI83 254 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 ALG10Q5BKT4 473 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 PABPC1L2AQ5JQF8 200 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 RGS7BPQ6MZT1 257 aaPredicted RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 SLC25A47Q6Q0C1 308 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 ICA1LQ8NDH6 482 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 OR13C2Q8NGS9 318 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 OR51A7Q8NH64 312 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 AKR7LQ8NHP1 331 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 RP9Q8TA86 221 aaKnown RBP14.27□□□□□ -0.13
USP40-212ENST00000473191 TXNIPQ9H3M7 391 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 TAAR3PQ9P1P4 343 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 HIF3AQ9Y2N7 669 aa14.27□□□□□ -0.13
USP40-212ENST00000473191 A0A1W2PPW3 197 aa14.26□□□□□ -0.13
USP40-212ENST00000473191 H7C1C5 153 aa14.26□□□□□ -0.13
USP40-212ENST00000473191 CXCR6O00574 342 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms