RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 WDR88Q6ZMY6 472 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 GPR137CQ8N3F9 429 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ICA1LQ8NDH6 482 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 IL17RDQ8NFM7 739 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SYNPRQ8TBG9 265 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 PMM1Q92871 262 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 DACT3Q96B18 629 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 UPRTQ96BW1 309 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ROPN1LQ96C74 230 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 COQ8BQ96D53 544 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 TRIM44Q96DX7 344 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 NEURL3Q96EH8 262 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SLC35G5Q96KT7 338 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 C3orf30Q96M34 536 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF317Q96PQ6 595 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SLC38A1Q9H2H9 487 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SAP30LQ9HAJ7 183 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 PATZ1Q9HBE1 687 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZDHHC18Q9NUE0 388 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 DECR2Q9NUI1 292 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 NKIRAS2Q9NYR9 191 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF346Q9UL40 294 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SLC35A3Q9Y2D2 325 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SIGLEC9Q9Y336 463 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 CHST2Q9Y4C5 530 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 DSPPQ9NZW4 1301 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 A8MXK9 166 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 F5H0A9 414 aaPredicted RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 TM9SF1O15321 606 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 PIP5K1CO60331 668 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 GPR137BO60478 399 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 IGHV4-59P01825 116 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 OPN1MWP04001 364 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SFTPBP07988 381 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 WNT2P09544 360 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 TFPTP0C1Z6 253 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 OPN1MW2P0DN77 364 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 OPN1MW3P0DN78 364 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 PF4V1P10720 104 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF43P17038 809 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 PAX7P23759 505 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 CXCR1P25024 350 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF81P51508 661 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MMP15P51511 669 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 KLF3P57682 345 aaPredicted RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 HOXA4Q00056 320 aaPredicted RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 GALK2Q01415 458 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MALLQ13021 153 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 CAMK2DQ13557 499 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 UGT3A2Q3SY77 523 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 FAM201AQ5SY85 155 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MRPL2Q5T653 305 aaKnown RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 OR4F3Q6IEY1 312 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF774Q6NX45 483 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 C16orf62Q7Z3J2 963 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ANKRD46Q86W74 232 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 RNF130Q86XS8 419 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 VRK2Q86Y07 508 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 GLB1L2Q8IW92 636 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 RIMKLAQ8IXN7 391 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 C20orf196Q8IYI0 205 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 CLIP4Q8N3C7 705 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 CADM2Q8N3J6 435 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SFXN5Q8TD22 340 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MTERF3Q96E29 417 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 TIMD4Q96H15 378 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SIGLEC11Q96RL6 698 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SH3GL3Q99963 347 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MRI1Q9BV20 369 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 IQCGQ9H095 443 aaKnown RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 MSL2Q9HCI7 577 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 EXOSC3Q9NQT5 275 aaKnown RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SLC17A7Q9P2U7 560 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SCOCQ9UIL1 159 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 FOXJ3Q9UPW0 622 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 RASD1Q9Y272 281 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 DNAJC15Q9Y5T4 150 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 NPTNQ9Y639 398 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 SACSQ9NZJ4 4579 aa4.39□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF816-ZNF321PA0A0X1KG74 233 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 RNF103-CHMP3A0A140T963 221 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 A0A1W2PPM1 405 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 WI2-2373I1.2A0A1W2PRP0 233 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 C5orf63A6NC05 138 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 CFAP73A6NFT4 308 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 AGAP5A6NIR3 686 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 CEACAM18A8MTB9 384 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 A8MVM7 634 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 LRRN3E7EW58 273 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SLC28A1O00337 649 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 HMGN4O00479 90 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 AZIN1O14977 448 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PAX4O43316 350 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 DHHO43323 396 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PEX11AO75192 247 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 CRCPO75575 148 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 VAMP5O95183 116 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 CPSF4O95639 269 aaKnown RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PPP1R3DO95685 299 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms