RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RNF149Q8NC42 400 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 OR6K2Q8NGY2 324 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PLPPR1Q8TBJ4 325 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC38A5Q8WUX1 472 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 BADQ92934 168 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 UPRTQ96BW1 309 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 TLCD1Q96CP7 247 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 CENPNQ96H22 339 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ADGRG7Q96K78 797 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF597Q96LX8 424 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 QKIQ96PU8 341 aaKnown RBP eCLIP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 CDCA3Q99618 268 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 TMED9Q9BVK6 235 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 UBXN6Q9BZV1 441 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SPRY4Q9C004 299 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 FAM49AQ9H0Q0 323 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 TLNRD1Q9H1K6 362 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 MFSD1Q9H3U5 465 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 GAREM1Q9H706 876 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 RHOFQ9HBH0 211 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SDF2L1Q9HCN8 221 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 IFT46Q9NQC8 304 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 C2orf42Q9NWW7 574 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 IL36GQ9NZH8 169 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 NPAP1Q9NZP6 1156 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 RCC2Q9P258 522 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 OR52A1Q9UKL2 312 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 YARS2Q9Y2Z4 477 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 USH1CQ9Y6N9 552 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ABCB11O95342 1321 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 FLT4P35916 1363 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 IGLV5-52A0A0A0MRZ9 124 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 NSG1A0A0A6YYJ2 146 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 A0A1W2PR80 420 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 DDTLA6NHG4 134 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 YJEFN3A6XGL0 299 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 C21orf140B9A014 251 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 E5RGE8 158 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 F5H768 121 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 HPGDSO60760 199 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 RNASEH1O60930 286 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 SERPINB7O75635 380 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MPZL1O95297 269 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 SEC24AO95486 1093 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 AP2A1O95782 977 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CGAP01215 116 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ISG15P05161 165 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 C2P06681 752 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 PRSS56P0CW18 603 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 HIST1H1CP16403 213 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CSNK2A2P19784 350 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MAOAP21397 527 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 S100PP25815 95 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CHATP28329 748 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 DUTP33316 252 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ARR3P36575 388 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 TNFSF9P41273 254 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 NSG1P42857 185 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MAGEA5P43359 124 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 HCAR3P49019 387 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CAV2P51636 162 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 FUT6P51993 359 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CTSCP53634 463 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 OR2B8PP59922 312 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ERVPABLB-1P60509 514 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MRPS6P82932 125 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 TLE4Q04727 773 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 SRYQ05066 204 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MAD2L1Q13257 205 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 POU6F1Q14863 301 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 WHAMMP3Q1A5X7 153 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MS4A18Q3C1V0 323 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 SOHLH1Q5JUK2 328 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 OGFRL1Q5TC84 451 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 RPL13AP3Q6NVV1 102 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 NIPAL1Q6NVV3 410 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM179Q6ZVK1 233 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 GDPD3Q7L5L3 318 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM144Q7Z5S9 345 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 MTURNQ8N3F0 131 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 STX19Q8N4C7 294 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 RFLNBQ8N5W9 214 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 EMC1Q8N766 993 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 LRRC52Q8N7C0 313 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 HSD17B11Q8NBQ5 300 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ADAD2Q8NCV1 583 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 OR9Q2Q8NGE9 314 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 OR10X1Q8NGY0 326 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 YIPF5Q969M3 257 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 FLYWCH2Q96CP2 140 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ITCHQ96J02 903 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 POM121L2Q96KW2 1035 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 Q96MT0 163 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF285Q96NJ3 590 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 UHRF2Q96PU4 802 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 CNN2Q99439 309 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 C2orf88Q9BSF0 95 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC25A33Q9BSK2 321 aa4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 ACTR3CQ9C0K3 210 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-210ENST00000468534 NAA50Q9GZZ1 169 aaKnown RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms