RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 C1orf198Q9H425 327 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 RABEP2Q9H5N1 569 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 KAT8Q9H7Z6 458 aaKnown RBP13.74□□□□□ -0.21
COL7A1-204ENST00000462475 A0A0A6YYJ9 748 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 BLOC1S5-TXNDC5H3BN57 136 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 HIST1H2ABP04908 130 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 F13BP05160 661 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 MMP7P09237 267 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 SELENOVP59797 346 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 MVKQ03426 396 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 RPL18Q07020 188 aaKnown RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 NFYCQ13952 458 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 HIST3H3Q16695 136 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 TBC1D28Q2M2D7 210 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 TTMPQ5BVD1 217 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 FAHD2BQ6P2I3 314 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 TMEM154Q6P9G4 183 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 C1orf229Q6ZS94 237 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 HIST3H2AQ7L7L0 130 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 DPPA2Q7Z7J5 298 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 SYT14Q8NB59 555 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 RBM15BQ8NDT2 890 aaKnown RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 OR10A6Q8NH74 314 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 PFN4Q8NHR9 129 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF519Q8TB69 540 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 ASB10Q8WXI3 467 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 HIST1H2ACQ93077 130 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 FAHD2AQ96GK7 314 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 SEPHS2Q99611 448 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 MRPL13Q9BYD1 178 aaKnown RBP13.73□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF665Q9H7R5 613 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 SLCO1C1Q9NYB5 712 aa13.73□□□□□ -0.21
COL7A1-204ENST00000462475 LOC105371242A0A075B767 164 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 TRAV20A0A0B4J274 112 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 MCIDASD6RGH6 385 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 PNPP00491 289 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 AVPP01185 164 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 CFPP27918 469 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 GZMMP51124 257 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF84P51523 738 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 UGT2B15P54855 530 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 UCP2P55851 309 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 PCGF3Q3KNV8 242 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 NRN1LQ496H8 165 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 SLC30A8Q8IWU4 369 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 LRRC18Q8N456 261 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 CPEB3Q8NE35 698 aaKnown RBP13.72□□□□□ -0.21
COL7A1-204ENST00000462475 SLC26A7Q8TE54 656 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 ZFAND2BQ8WV99 257 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 DYDC1Q8WWB3 177 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 C11orf40Q8WZ69 217 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 ATP6V1G3Q96LB4 118 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 BCL2L14Q9BZR8 327 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 G6PC2Q9NQR9 355 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 NKIRAS2Q9NYR9 191 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 GPR160Q9UJ42 338 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 CACNG2Q9Y698 323 aa13.72□□□□□ -0.21
COL7A1-204ENST00000462475 IGHV1-69-2A0A0G2JMI3 117 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 IQCMA0A1B0GVH7 501 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 A0A1W2PRG6 482 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 DEAF1O75398 565 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-204ENST00000462475 TRMUO75648 421 aaKnown RBP13.71□□□□□ -0.21
COL7A1-204ENST00000462475 OR7A10O76100 309 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 SLC2A10O95528 541 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 PTHP01270 115 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 MT-ND1P03886 318 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 TNFRSF1BP20333 461 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 EPHA1P21709 976 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 CDAP32320 146 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 AQP2P41181 271 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 CRYBB2P43320 205 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 RAD52P43351 418 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 HSF2Q03933 536 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 PLP2Q04941 152 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 VMACQ2NL98 169 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 PABPC1L2AQ5JQF8 200 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 TMEM255AQ5JRV8 349 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 C10orf128Q5T292 105 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 INTS11Q5TA45 600 aaKnown RBP13.71□□□□□ -0.21
COL7A1-204ENST00000462475 USP51Q70EK9 711 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 NKAIN4Q8IVV8 208 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 OR1J2Q8NGS2 313 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 OR1J1Q8NGS3 322 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 MOSPD2Q8NHP6 518 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 TMEM255BQ8WV15 326 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 STON2Q8WXE9 905 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 NANOGQ9H9S0 305 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 C20orf141Q9NUB4 165 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 WIPI2Q9Y4P8 454 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 UGT2A1Q9Y4X1 527 aa13.71□□□□□ -0.21
COL7A1-204ENST00000462475 IGKV1D-43A0A0B4J1Z2 117 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 CENPBD1B2RD01 187 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 PLPP2O43688 288 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 SHOX2O60902 331 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 MPZL1O95297 269 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 IGHV3-13P01766 116 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ACADSP16219 412 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 FUT1P19526 365 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 CCNOP22674 350 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 APLNRP35414 380 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms