RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 MOKQ9UQ07 419 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 LOC102725191A0A1B0GVB3 256 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ANKRD61A6NGH8 418 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ZIC2O95409 532 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 MMP2P08253 660 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 FPR3P25089 353 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 CD80P33681 288 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 TRHRP34981 398 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ETV6P41212 452 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 HTR5AP47898 357 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 RAB11AP62491 216 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 CDKN3Q16667 212 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ZNF425Q6IV72 752 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 NANPQ8TBE9 248 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ANKRD9Q96BM1 317 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 SAT2Q96F10 170 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 C10orf90Q96M02 699 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 UHRF2Q96PU4 802 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ATP13A2Q9NQ11 1180 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 PRSS16Q9NQE7 514 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 CSAG2Q9Y5P2 127 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 TRBV11-1A0A0K0K1C0 115 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ADAM23O75077 832 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 HMGA1P17096 107 aaKnown RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 HTR3AP46098 478 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 TMEM99Q8N816 258 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 OR5K2Q8NHB8 316 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 UBTD2Q8WUN7 234 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 AMDHD1Q96NU7 426 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 EXOSC3Q9NQT5 275 aaKnown RBP13.34□□□□□ -0.27
PTPRU-204ENST00000428026 ACOXLQ9NUZ1 547 aa13.34□□□□□ -0.27
PTPRU-204ENST00000428026 GIPP09681 153 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 HLA-DOBP13765 273 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 GABRB1P18505 474 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 UBE2IP63279 158 aaKnown RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM182Q6ZP80 229 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 NKAIN4Q8IVV8 208 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 RDH10Q8IZV5 341 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 NXT1Q9UKK6 140 aaKnown RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 TRAPPC2LQ9UL33 140 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 A0A0B4J203 849 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 OR2C1O95371 312 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 GLI4P10075 376 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 SPI1P17947 270 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 PTGER4P35408 488 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF93P35789 620 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 NPSR1Q6W5P4 371 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 PLK3Q9H4B4 646 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 WSB2Q9NYS7 404 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 NDRG4Q9ULP0 352 aaKnown RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 WIF1Q9Y5W5 379 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 PRSS38A1L453 326 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 HOXC11O43248 304 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 SLC2A10O95528 541 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 NAGAP17050 411 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 CSNK1DP48730 415 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 EMP3P54852 163 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 GLYR1Q49A26 553 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 FAM74A1Q5RGS3 127 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 FAM199XQ6PEV8 388 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 ADGRE4PQ86SQ3 457 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 OR1E3Q8WZA6 343 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 SPACA1Q9HBV2 294 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 ABHD17BQ5VST6 288 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 VASH1Q7L8A9 365 aaPredicted RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 SLC22A24Q8N4F4 322 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 OR2G3Q8NGZ4 309 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 PIGTQ969N2 578 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 C1QTNF3Q9BXJ4 246 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 OPA3Q9H6K4 179 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 OBP2BQ9NPH6 170 aa13.33□□□□□ -0.28
PTPRU-204ENST00000428026 EXO1Q9UQ84 846 aaKnown RBP13.33□□□□□ -0.28
PTPRU-204ENST00000428026 SERINC4A6NH21 518 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 CSF3P09919 207 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 CLDN17P56750 224 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 CAMK2BQ13554 666 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF680Q8NEM1 530 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM174Q8WUU8 243 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ENKD1Q9H0I2 346 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ACER3Q9NUN7 267 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 TCRBV5S1A1TA0A578 114 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 DCTN6O00399 190 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 GABRA2P47869 451 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 NPBWR1P48145 328 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM176BQ3YBM2 270 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ACSM5Q6NUN0 579 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 MFSD9Q8NBP5 474 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 SLC25A21Q9BQT8 299 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM38AQ9H6F2 299 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ADAM29Q9UKF5 820 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 HBQ1P09105 142 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 POU3F2P20265 443 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-204ENST00000428026 FABP6P51161 128 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ELLP55199 621 aaPredicted RBP13.32□□□□□ -0.28
PTPRU-204ENST00000428026 MLF1P58340 268 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 HBG1P69891 147 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 HBG2P69892 147 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF266Q14584 549 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 CDH26Q8IXH8 852 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms