RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RAD21L1Q9H4I0 556 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 MMP26Q9NRE1 261 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 DECR2Q9NUI1 292 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ZNF446Q9NWS9 450 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 UBAP1Q9NZ09 502 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 TESQ9UGI8 421 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 ZNF346Q9UL40 294 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 USH1CQ9Y6N9 552 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 A0A0G2JMP0 313 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 A0A0X1KG70 313 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 ZSCAN5BA6NJL1 495 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 BLOC1S5-TXNDC5H3BN57 136 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 M0QX08 132 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 ATP8B1O43520 1251 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 PRSS23O95084 383 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SLC2A10O95528 541 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 BCL10O95999 233 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 FSHBP01225 129 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 IGHV1-46P01743 117 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 F13BP05160 661 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 MMP7P09237 267 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 ANPEPP15144 967 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SLC6A2P23975 617 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 IDH3AP50213 366 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 ZNF81P51508 661 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SELENOVP59797 346 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 MAGOHP61326 146 aaKnown RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 TBC1D28Q2M2D7 210 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 PABPC1L2AQ5JQF8 200 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 TMEM53Q6P2H8 277 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 DLEU7Q6UYE1 221 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 PTOV1Q86YD1 416 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 ZNF101Q8IZC7 436 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 BPIFB2Q8N4F0 458 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 RBM15BQ8NDT2 890 aaKnown RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 OR4M2Q8NGB6 313 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 AKR7LQ8NHP1 331 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 ZNF519Q8TB69 540 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 NANPQ8TBE9 248 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SNX33Q8WV41 574 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 IPCEF1Q8WWN9 437 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 GEMIN6Q8WXD5 167 aaKnown RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 C11orf40Q8WZ69 217 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 DVL3Q92997 716 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 SPDL1Q96EA4 605 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SLC25A44Q96H78 314 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 DCLRE1CQ96SD1 692 aaKnown RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 CPPED1Q9BRF8 314 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 SPATA5L1Q9BVQ7 753 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SUCNR1Q9BXA5 334 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 DENND2DQ9H6A0 471 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 TMEM38AQ9H6F2 299 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 C7orf69Q9H7B7 122 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 NPHS2Q9NP85 383 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 TCF7L2Q9NQB0 619 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SLCO1C1Q9NYB5 712 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.87□□□□□ -1.31
VIM-202ENST00000421459 SLC13A4Q9UKG4 626 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 SLC7A7Q9UM01 511 aa6.87□□□□□ -1.31
VIM-202ENST00000421459 LOC100509620A0A075B734 347 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 IGHV3OR16-10A0A075B7F0 116 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 ISPDA4D126 451 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 C5orf49A4QMS7 147 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 PRORSD1PA6NEY8 169 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 CLDN25C9JDP6 229 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 TRAPPC2LH3BP13 241 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 CHP2O43745 196 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 SHOX2O60902 331 aaPredicted RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 TRMUO75648 421 aaKnown RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 UBOX5O94941 541 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 MT-ATP6P00846 226 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 NGFP01138 241 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 IGHV3-13P01766 116 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 ASAH2BP0C7U1 165 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 UMPSP11172 480 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 GPX2P18283 190 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 FUT1P19526 365 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 TNFRSF1BP20333 461 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 CD247P20963 164 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 DRD4P21917 467 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 APLNRP35414 380 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 AQP2P41181 271 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 MMP15P51511 669 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 CLRN1P58418 232 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 MTPNP58546 118 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 SEC61A1P61619 476 aaKnown RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 FMODQ06828 376 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 LAPTM4AQ15012 233 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 HIST3H3Q16695 136 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 HFEQ30201 348 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 PCGF3Q3KNV8 242 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 AGKQ53H12 422 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 RUNDC3AQ59EK9 446 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 KLF17Q5JT82 389 aaPredicted RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 ZNF613Q6PF04 617 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 TTC33Q6PID6 262 aaPredicted RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 RANBP3LQ86VV4 465 aaPredicted RBP6.86□□□□□ -1.31
VIM-202ENST00000421459 SNX32Q86XE0 403 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 CLDN22Q8N7P3 220 aa6.86□□□□□ -1.31
VIM-202ENST00000421459 HIPK4Q8NE63 616 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms