RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 SMARCA1P28370 1054 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GRPRP30550 384 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 EIF2S3P41091 472 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GPR1P46091 355 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 QARSP47897 775 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SLC18A1P54219 525 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 CDH8P55286 799 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 DDX10Q13206 875 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ERCC8Q13216 396 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GCKRQ14397 625 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 EXOSC7Q15024 291 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 TAF5Q15542 800 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SNRNP35Q16560 246 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 NRF1Q16656 503 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ARL13BQ3SXY8 428 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MTERF2Q49AM1 385 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 KHDC1Q4VXA5 237 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 KIAA0930Q6ICG6 404 aaPredicted RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 NOXRED1Q6NXP6 359 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 LANCL3Q6ZV70 420 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MAATS1Q7Z4T9 603 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ASPGQ86U10 573 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 CRLF3Q8IUI8 442 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 CDKL3Q8IVW4 592 aaPredicted RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 HS3ST5Q8IZT8 346 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 TMEM123Q8N131 208 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MS4A15Q8N5U1 240 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SLC15A4Q8N697 577 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 PCDH20Q8N6Y1 951 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SAMD12Q8N8I0 201 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 XXYLT1Q8NBI6 393 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 OR11G2Q8NGC1 345 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 OR8U1Q8NH10 309 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GSDMBQ8TAX9 411 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MCOLN3Q8TDD5 553 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GNPDA2Q8TDQ7 276 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ITLN2Q8WWU7 325 aaPredicted RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 PSMF1Q92530 271 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ZNF75CPQ92670 426 aaPredicted RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 RNASE6Q93091 150 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 NTAN1Q96AB6 310 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 TBC1D20Q96BZ9 403 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 FLYWCH2Q96CP2 140 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 DDIT4LQ96D03 193 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 RNF183Q96D59 192 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MRPL53Q96EL3 112 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 PGLYRP4Q96LB8 373 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ZNF488Q96MN9 340 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 CCL19Q99731 98 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 GABRG3Q99928 467 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SELENOSQ9BQE4 189 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 C11orf70Q9BRQ4 267 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 DHRS4Q9BTZ2 278 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 KLHL4Q9C0H6 718 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 COMMD5Q9GZQ3 224 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 DDX24Q9GZR7 859 aaKnown RBP eCLIP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 VCX2Q9H322 139 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 FBXL15Q9H469 300 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 LIN28AQ9H9Z2 209 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 PPCSQ9HAB8 311 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MAGEF1Q9HAY2 307 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 VCX3AQ9NNX9 186 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 BPIFA1Q9NP55 256 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 FGF21Q9NSA1 209 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 OR5AC2Q9NZP5 309 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 TAAR3PQ9P1P4 343 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 RCE1Q9Y256 329 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MRPS23Q9Y3D9 190 aaKnown RBP-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ATP6V0A2Q9Y487 856 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 ZNF780BQ9Y6R6 833 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 MAU2Q9Y6X3 613 aa-2.13□□□□□ -2.75
RNU4-88P-201ENST00000411220 SIPA1L2Q9P2F8 1722 aaPredicted RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 KIAA1549LQ6ZVL6 1849 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 XIRP1Q702N8 1843 aaKnown RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 PTPRFP10586 1907 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 A0A0A0MQY5 61 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 TRAV14DV4A0A0A6YYC5 116 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 A0A1W2PPQ1 181 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 GSTTP1A0A1W2PQM5 241 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 A0A1W2PRB8 838 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 DHRS12A0PJE2 317 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 ANKRD18BA2A2Z9 1011 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 NCF1BA6NI72 391 aaPredicted RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 DHRS7CA6NNS2 312 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 ZNF815PA8K554 130 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 TCP10L2B9ZVM9 353 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 RTCAO00442 366 aaKnown RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 IPO8O15397 1037 aaKnown RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 OR7C2O60412 319 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 DDHD2O94830 711 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 OR4F21O95013 312 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 SNAPINO95295 136 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 SERPINC1P01008 464 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 DBTP11182 482 aaKnown RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 EZRP15311 586 aaKnown RBP-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 CYP3A5P20815 502 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 VDAC1P21796 283 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 PRTN3P24158 256 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 YWHAQP27348 245 aa-2.14□□□□□ -2.75
RNU4-88P-201ENST00000411220 PRDX5P30044 214 aa-2.14□□□□□ -2.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms