RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ADGRL4Q9HBW9 690 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 PLEKHB1Q9UF11 243 aaPredicted RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 NOX1Q9Y5S8 564 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 IGKV1D-42A0A075B6H8 117 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 ZC3H12DA2A288 527 aaKnown RBP11.99□□□□□ -0.49
LIMS1-204ENST00000409441 B8ZZF3 427 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 H0YC42 278 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 GABRPO00591 440 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 RGS5O15539 181 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 SEC14L5O43304 696 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 RNF13O43567 381 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 RGS9O75916 674 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-204ENST00000409441 CPN1P15169 458 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF708P17019 499 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 CLDN15P56746 228 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 CLDN18P56856 261 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 EGR4Q05215 589 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 GGTLC2Q14390 218 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 SLC35D3Q5M8T2 416 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 C1QL3Q5VWW1 255 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 GGNQ86UU5 652 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 ZFP41Q8N8Y5 198 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 POMGNT2Q8NAT1 580 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 OR10H4Q8NGA5 316 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 WDYHV1Q96HA8 205 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 ARL5BQ96KC2 179 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 KATNB1Q9BVA0 655 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 POTEKPQ9BYX7 375 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 NDEL1Q9GZM8 345 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 KCNN2Q9H2S1 579 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF407Q9C0G0 2248 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 MED12Q93074 2177 aa11.99□□□□□ -0.49
LIMS1-204ENST00000409441 BSNQ9UPA5 3926 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 A0A0J9YW62 118 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 EIF1AYO14602 144 aaKnown RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 NPIPB7O75200 414 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 APEHP13798 732 aaKnown RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 GTF2E2P29084 291 aaKnown RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 MXD1Q05195 221 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 GXYLT1Q4G148 440 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 DDI2Q5TDH0 399 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 C1orf140Q5VVS0 124 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 ESPNLQ6ZVH7 1005 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF843Q8N446 348 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 MEIOBQ8N635 442 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 POC5Q8NA72 575 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 OR52E2Q8NGJ4 325 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 SETD6Q8TBK2 473 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 STK35Q8TDR2 534 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 KTI12Q96EK9 354 aaPredicted RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 DNAJA3Q96EY1 480 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 KLHL15Q96M94 604 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 OR5B2Q96R09 309 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 TMED9Q9BVK6 235 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 ISG20L2Q9H9L3 353 aaKnown RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 NRIP3Q9NQ35 241 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 ALKBH4Q9NXW9 302 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF229Q9UJW7 825 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 RALYQ9UKM9 306 aaKnown RBP11.98□□□□□ -0.49
LIMS1-204ENST00000409441 CAMK2AQ9UQM7 478 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 IER3IP1Q9Y5U9 82 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 KALRNO60229 2985 aa11.98□□□□□ -0.49
LIMS1-204ENST00000409441 A0A1W2PNR3 127 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 MCIDASD6RGH6 385 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 IMPA2O14732 288 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 TNFSF11O14788 317 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 CASKO14936 926 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 CLEC2LP0C7M8 214 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 OR2T7P0C7T2 308 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 HIST1H1CP16403 213 aaKnown RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 RPL4P36578 427 aaKnown RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 SLC16A1P53985 500 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 CARD18P57730 90 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 MYBPHQ13203 477 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 C3AR1Q16581 482 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 B3GLCTQ6Y288 498 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 LAX1Q8IWV1 398 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 OR5M9Q8NGP3 310 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 OR2T27Q8NH04 317 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 MRPL48Q96GC5 212 aaKnown RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 SDHCQ99643 169 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 PRDM14Q9GZV8 571 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 TPK1Q9H3S4 243 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 HIF3AQ9Y2N7 669 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 HDGFL3Q9Y3E1 203 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 V9GYH0 126 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 DNAJC13O75165 2243 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 TRAV36DV7A0A075B6V5 113 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 PLPP2O43688 288 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 C1QL1O75973 258 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 ABOP16442 354 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 RPS5P46782 204 aaKnown RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 EIF1AXP47813 144 aaKnown RBP11.97□□□□□ -0.49
LIMS1-204ENST00000409441 MTNR1BP49286 362 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 ACTA2P62736 377 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 PPP3R1P63098 170 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 ACTG2P63267 376 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF85Q03923 595 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 RBPJQ06330 500 aa11.97□□□□□ -0.49
LIMS1-204ENST00000409441 C19orf57Q0VDD7 668 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms