RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZAR1LA6NP61 321 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 H0YHG0 523 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 H0YJX3 145 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 RPL36A-HNRNPH2H7BZ11 118 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 RNF13O43567 381 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 OR6A2O95222 327 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 BAG2O95816 211 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 F13BP05160 661 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 PGA4P0DJD7 388 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 PGA3P0DJD8 388 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 IFNGR1P15260 489 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 IGFBP5P24593 272 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 PEX2P28328 305 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 SDHAP31040 664 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 SLC6A6P31641 620 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 DAP3P51398 398 aaKnown RBP8.09□□□□□ -1.11
VPS53-203ENST00000401468 CTXN1P60606 82 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 RPL27P61353 136 aaKnown RBP8.09□□□□□ -1.11
VPS53-203ENST00000401468 EFNB1P98172 346 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 POU3F1Q03052 451 aaPredicted RBP8.09□□□□□ -1.11
VPS53-203ENST00000401468 ACKR1Q16570 336 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 SLC36A3Q495N2 470 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 TMEM201Q5SNT2 666 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 GPR139Q6DWJ6 353 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 ZBTB49Q6ZSB9 765 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 C22orf34Q6ZV56 151 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 SLC35D2Q76EJ3 337 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 NUFIP2Q7Z417 695 aaKnown RBP8.09□□□□□ -1.11
VPS53-203ENST00000401468 HDDC2Q7Z4H3 204 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 GPAT4Q86UL3 456 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 ARIH2OSQ8N7S6 290 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 NRG4Q8WWG1 115 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 TMEM54Q969K7 222 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 TXNDC15Q96J42 360 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 SAMD8Q96LT4 415 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 TSPAN32Q96QS1 320 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 OR2M2Q96R28 347 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 KATNB1Q9BVA0 655 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 ZNF556Q9HAH1 456 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 KRT84Q9NSB2 600 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 MALT1Q9UDY8 824 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 ST6GALNAC2Q9UJ37 374 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 BAIAP2Q9UQB8 552 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 EMC9Q9Y3B6 208 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 ADAM18Q9Y3Q7 739 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 A8MXE2 369 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 C11orf98E9PRG8 122 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 AKAP8O43823 692 aaKnown RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 MITFO75030 526 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 PLGP00747 810 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 IGFBP1P08833 259 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 FSTP19883 344 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 COX5AP20674 150 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 AHCYP23526 432 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 EDNRAP25101 427 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 EPHA2P29317 976 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 GIPRP48546 466 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 SELENOPP49908 381 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 RPS6KA3P51812 740 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 CRISP1P54107 249 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 RUNX1T1Q06455 604 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 NPRL3Q12980 569 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 TRIP10Q15642 601 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 TSC22D1Q15714 1073 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 MESTQ5EB52 335 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 SLX4IPQ5VYV7 408 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 ZNF627Q7L945 461 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 ADCK1Q86TW2 530 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 C20orf196Q8IYI0 205 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 GABRG1Q8N1C3 465 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 OR2T33Q8NG76 320 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 OR52L1Q8NGH7 329 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 OR4Q3Q8NH05 313 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 MAGEE2Q8TD90 523 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 EME1Q96AY2 570 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 SLC25A44Q96H78 314 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 HRASLS5Q96KN8 279 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 RASSF4Q9H2L5 321 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 TBC1D23Q9NUY8 699 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 MED29Q9NX70 200 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 VSX1Q9NZR4 365 aaPredicted RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 KIF17Q9P2E2 1029 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 NOSIPQ9Y314 301 aaKnown RBP8.08□□□□□ -1.12
VPS53-203ENST00000401468 TLN2Q9Y4G6 2542 aa8.08□□□□□ -1.12
VPS53-203ENST00000401468 SH3D21A4FU49 640 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 A6NIZ1 184 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 SLC43A1O75387 559 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 MRPL33O75394 65 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 TRMUO75648 421 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 SOX14O95416 240 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 PPP1R3DO95685 299 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 BCL10O95999 233 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ACADSP16219 412 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 CCKARP32238 428 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 GRK5P34947 590 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 RAD23AP54725 363 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 BIDP55957 195 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 CLDN17P56750 224 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 RAP1BP61224 184 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms