RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CELSR3Q9NYQ7 3312 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 LTBP2Q14767 1821 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 MPZL1O95297 269 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 HNRNPA1P09651 372 aaKnown RBP eCLIP18.99■□□□□ 0.63
CTCF-202ENST00000401394 MAOBP27338 520 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 RPL18Q07020 188 aaKnown RBP18.99■□□□□ 0.63
CTCF-202ENST00000401394 UBXN2BQ14CS0 331 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 TOMM34Q15785 309 aaPredicted RBP18.99■□□□□ 0.63
CTCF-202ENST00000401394 STEAP1BQ6NZ63 245 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 BCORP1Q8N888 145 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 BMFQ96LC9 184 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 DPYSL5Q9BPU6 564 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 CCDC3Q9BQI4 270 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 MFRPQ9BY79 579 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 NRSN2Q9GZP1 204 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 K7EQS6 105 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 OR4E1P0C645 316 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 ST6GAL1P15907 406 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 FAM109BQ6ICB4 259 aaPredicted RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 PHOSPHO1Q8TCT1 267 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 RPS4Y2Q8TD47 263 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 FAM3DQ96BQ1 224 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 RP1P56715 2156 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 GPR89AB7ZAQ6 455 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 GPR89BP0CG08 455 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 IL32P24001 234 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 RBM34P42696 430 aaKnown RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 RPL35P42766 123 aaKnown RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 SRSF3P84103 164 aaKnown RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 MFGE8Q08431 387 aaPredicted RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 ILF3Q12906 894 aaKnown RBP eCLIP18.98■□□□□ 0.631e-7■■□□□ 14.1
CTCF-202ENST00000401394 ITPRIPL2Q3MIP1 535 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 TMEM196Q5HYL7 178 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 MARCH3Q86UD3 253 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 PXT1Q8NFP0 134 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 UTP23Q9BRU9 249 aaKnown RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 ZNF275Q9NSD4 429 aaPredicted RBP18.98■□□□□ 0.63
CTCF-202ENST00000401394 PLEKHA6Q9Y2H5 1048 aa18.98■□□□□ 0.63
CTCF-202ENST00000401394 TRBV5-5A0A0J9YX44 114 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 AMY2AP04746 511 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 OR7A5Q15622 319 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 ANKRD16Q6P6B7 361 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 SLC16A9Q7RTY1 509 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 ZNF227Q86WZ6 799 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 EXD3Q8N9H8 876 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 CLEC1AQ8NC01 280 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 STEAP2Q8NFT2 490 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 OR6N1Q8NGY5 312 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 ELOVL3Q9HB03 270 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 B9D1Q9UPM9 204 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 FANCMQ8IYD8 2048 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 LOC101059948A0A1B0GTJ6 334 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 LINC01553A4QN01 128 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 SERINC4A6NH21 518 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 HMSDA8MTL9 139 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 SULT1B1O43704 296 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 AVPR2P30518 371 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 GDI1P31150 447 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 C1orf53Q5VUE5 145 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 GABRG1Q8N1C3 465 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 GVQW1Q8N7I0 195 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 SLC25A36Q96CQ1 311 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 PRR13Q9NZ81 148 aa18.97■□□□□ 0.63
CTCF-202ENST00000401394 TMEM235A6NFC5 223 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZNF254O75437 659 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 PRSS3P35030 304 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 RPS4XP62701 263 aaKnown RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 MC2RQ01718 297 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 BAMBIQ13145 260 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZNF74Q16587 644 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 BEST3Q8N1M1 668 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 TMEM185AQ8NFB2 350 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZNF471Q9BX82 626 aaPredicted RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 TMEM231Q9H6L2 316 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 MRPS18BQ9Y676 258 aaKnown RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 KIF26BQ2KJY2 2108 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 URADA6NGE7 173 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ARPC3O15145 178 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 C4BPBP20851 252 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 GRK6P43250 576 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 AKR1D1P51857 326 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ATP1B3P54709 279 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 SPOCK1Q08629 439 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZNHIT3Q15649 155 aaPredicted RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 OR52W1Q6IF63 320 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 CHRDL2Q6WN34 429 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 CDC20BQ86Y33 519 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 FGF14Q92915 247 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 LYRM4Q9HD34 91 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 GRHPRQ9UBQ7 328 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 CDV3Q9UKY7 258 aaKnown RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 AKAIN1P0CW23 69 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ALOX5APP20292 161 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZNF169Q14929 603 aaPredicted RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 GLYATL3Q5SZD4 288 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 FAM46BQ96A09 425 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 ZC3H10Q96K80 434 aaKnown RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 GDE1Q9NZC3 331 aa18.96■□□□□ 0.63
CTCF-202ENST00000401394 RABL2BQ9UNT1 228 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms