RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 A6NL46 340 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 KIR3DP1A8MWS1 328 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 MS4A18H0YCH9 400 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 NME2P1O60361 137 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 AKR7A3O95154 331 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 PLGP00747 810 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SERPINA3P01011 423 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 GYPBP06028 91 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SP1P08047 785 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 NR2C1P13056 603 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 NME2P22392 152 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 POU3F1Q03052 451 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 MS4A18Q3C1V0 323 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM225Q6GV28 225 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF544Q6NX49 715 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM91Q6ZNR0 172 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC35D2Q76EJ3 337 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SYT14Q8NB59 555 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 MDS2Q8NDY4 140 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 IL17RDQ8NFM7 739 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SIGLEC12Q96PQ1 595 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TIMP4Q99727 224 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ATF6BQ99941 703 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ALG12Q9BV10 488 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 HDHD5Q9BXW7 423 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 VSX1Q9NZR4 365 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 AQP7P3A6NL99 342 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 CENPBD1B2RD01 187 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 F10P00742 488 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 HLA-DQB1P01920 261 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TRAPPC2P0DI81 140 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TRAPPC2BP0DI82 140 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 CLUP10909 449 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 SPNP16150 400 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 PLGLB1Q02325 96 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 AGAP6Q5VW22 663 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 VASH1Q7L8A9 365 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 LSRQ86X29 649 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ZMYND19Q96E35 227 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 OXGR1Q96P68 337 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 RERGLQ9H628 205 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ISG20L2Q9H9L3 353 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 TIGARQ9NQ88 270 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 DEPPQ9NTK1 212 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 PLA2G3Q9NZ20 509 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 ITGB1BP2Q9UKP3 347 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 A0A1W2PNR3 127 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 EVX1P49640 407 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 FOXO1Q12778 655 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 EEF1A1P5Q5VTE0 462 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 ESPNLQ6ZVH7 1005 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 SULF2Q8IWU5 870 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 HAVCR2Q8TDQ0 301 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 ASB10Q8WXI3 467 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 UBL7Q96S82 380 aaPredicted RBP16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 MFRPQ9BY79 579 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 SYT4Q9H2B2 425 aa16.29■□□□□ 0.2
CCDC88C-203ENST00000389856 A0A1W2PQ09 198 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 DCDC2BA2VCK2 349 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 ACOT7O00154 380 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 PHYHO14832 338 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 TLX3O43711 291 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 HPNP05981 417 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 MRPL3P09001 348 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 IFNGR1P15260 489 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 MYL9P24844 172 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 B3GALT5-AS1P59052 145 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 FOXK1P85037 733 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF85Q03923 595 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 FOXC1Q12948 553 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 BAK1Q16611 211 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 PYDC2Q56P42 97 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 HBMQ6B0K9 141 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 DMKNQ6E0U4 476 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC16A9Q7RTY1 509 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 YRDCQ86U90 279 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC35F2Q8IXU6 374 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 EXD3Q8N9H8 876 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 PHYHIPQ92561 330 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 ADAD1Q96M93 576 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 TTYH2Q9BSA4 534 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 PPP1R3EQ9H7J1 279 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF703Q9H7S9 590 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 SRA1Q9HD15 236 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM14AQ9Y6G1 99 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 PIEZO1Q92508 2521 aa16.28■□□□□ 0.2
CCDC88C-203ENST00000389856 ANKRD61A6NGH8 418 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM127O75204 238 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 CSF3P09919 207 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF43P17038 809 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 POU3F2P20265 443 aaPredicted RBP16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 TGM4P49221 684 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 CCL11P51671 97 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 HYAL4Q2M3T9 481 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 CCDC58Q4VC31 144 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 B3GLCTQ6Y288 498 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 ASB18Q6ZVZ8 466 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 PM20D2Q8IYS1 436 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 GHDCQ8N2G8 530 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms