RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARHGAP40Q5TG30 622 aa14.83□□□□□ -0.03
SDC4-201ENST00000372733 ATG4DQ86TL0 474 aaPredicted RBP14.83□□□□□ -0.03
SDC4-201ENST00000372733 GALNT16Q8N428 558 aa14.83□□□□□ -0.03
SDC4-201ENST00000372733 PLPP7Q8NBV4 271 aa14.83□□□□□ -0.03
SDC4-201ENST00000372733 GRHPRQ9UBQ7 328 aa14.83□□□□□ -0.03
SDC4-201ENST00000372733 MRTO4Q9UKD2 239 aaKnown RBP14.83□□□□□ -0.03
SDC4-201ENST00000372733 FBXO4Q9UKT5 387 aa14.83□□□□□ -0.03
SDC4-201ENST00000372733 TMEM82A0PJX8 343 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 FAM74A7A6NL05 159 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 DNASE2O00115 360 aaPredicted RBP14.83□□□□□ -0.04
SDC4-201ENST00000372733 SRPX2O60687 465 aaPredicted RBP14.83□□□□□ -0.04
SDC4-201ENST00000372733 ZNF432O94892 652 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 ITGB2P05107 769 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 GUSBP08236 651 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 OR4E1P0C645 316 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 COL9A1P20849 921 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 KIR2DL1P43626 348 aaPredicted RBP14.83□□□□□ -0.04
SDC4-201ENST00000372733 PSMD4P55036 377 aaKnown RBP14.83□□□□□ -0.04
SDC4-201ENST00000372733 BTG2P78543 158 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 EGR4Q05215 589 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 FAM74A3Q4VXF1 159 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 TMEM31Q5JXX7 168 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 ELP2Q6IA86 826 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 ASPHD2Q6ICH7 369 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 CBLN3Q6UW01 205 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 SLC35D2Q76EJ3 337 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 ZNF546Q86UE3 836 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 PPP1R14AQ96A00 147 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 SLC25A28Q96A46 364 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 BMFQ96LC9 184 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 SLC22A13Q9Y226 551 aa14.83□□□□□ -0.04
SDC4-201ENST00000372733 K7EQS6 105 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 VEGFBP49765 207 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 DEFA5Q01523 94 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 EIF2B5Q13144 721 aaKnown RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 C12orf45Q8N5I9 185 aaPredicted RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 STEAP2Q8NFT2 490 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 OR1J2Q8NGS2 313 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 GPX8Q8TED1 209 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 KTI12Q96EK9 354 aaPredicted RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 INTS14Q96SY0 518 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 TINAGL1Q9GZM7 467 aaPredicted RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 LOC100289279A0A1B0GTE1 492 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 H3BUI4 141 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 GMFGO60234 142 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 UBBP0CG47 229 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 UBCP0CG48 685 aaKnown RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 LIPCP11150 499 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 APEHP13798 732 aaKnown RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 RPS27AP62979 156 aaKnown RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 UBA52P62987 128 aaKnown RBP14.82□□□□□ -0.04
SDC4-201ENST00000372733 NR0B2Q15466 257 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 ALG11Q2TAA5 492 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 PM20D2Q8IYS1 436 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 BEST3Q8N1M1 668 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 FAM131CQ96AQ9 280 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 LRRC46Q96FV0 321 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 DCBLD2Q96PD2 775 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 C1orf198Q9H425 327 aa14.82□□□□□ -0.04
SDC4-201ENST00000372733 SLC17A2O00624 439 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 RAB3DO95716 219 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 ASAH2BP0C7U1 165 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 MAOAP21397 527 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 GDI1P31150 447 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 RASGEF1BQ0VAM2 473 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 LRRC37A5PQ49AS3 106 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 WBP2NLQ6ICG8 309 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 TMEM205Q6UW68 189 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 PHOSPHO1Q8TCT1 267 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 ZNF75AQ96N20 296 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 PTDSS2Q9BVG9 487 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 SLC25A32Q9H2D1 315 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 TMEM185BQ9H7F4 350 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 OBP2AQ9NY56 170 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 RASL12Q9NYN1 266 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 RANBP2P49792 3224 aaKnown RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 CACNA1IQ9P0X4 2223 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 CCSO14618 274 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 EIF4E2O60573 245 aaKnown RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 ALOX12BO75342 701 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 APBB3O95704 486 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 AMY2AP04746 511 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 ST6GAL1P15907 406 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 MGMTP16455 207 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 PRKACAP17612 351 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 GPR3P46089 330 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 LUMP51884 338 aaPredicted RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 TFF2Q03403 129 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 EGR3Q06889 387 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 BEX5Q5H9J7 111 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 ZNF627Q7L945 461 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 DGAT2Q96PD7 388 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 PELOQ9BRX2 385 aaKnown RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 ZMAT3Q9HA38 289 aaKnown RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 ELOVL3Q9HB03 270 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 GDE1Q9NZC3 331 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 CPNE7Q9UBL6 633 aa14.81□□□□□ -0.04
SDC4-201ENST00000372733 YBX2Q9Y2T7 364 aaKnown RBP14.81□□□□□ -0.04
SDC4-201ENST00000372733 PMS2P2O95744 297 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 WDPCPO95876 746 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms