RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TUBA1BP68363 451 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZXDAP98168 799 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CHAF1BQ13112 559 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DYNC1I2Q13409 638 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 TMED1Q13445 227 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DCTN2Q13561 401 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 TSTQ16762 297 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 NRN1LQ496H8 165 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 VWA2Q5GFL6 755 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PWWP2BQ6NUJ5 590 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NIPAL1Q6NVV3 410 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GUSBP11Q6P575 273 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TUBA3EQ6PEY2 450 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TSSK4Q6SA08 328 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CLEC9AQ6UXN8 241 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TUBA1AQ71U36 451 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MEPCEQ7L2J0 689 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 SZRD1Q7Z422 152 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GGNQ86UU5 652 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 P3H2Q8IVL5 708 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 YAF2Q8IY57 180 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 UBQLNLQ8IYU4 475 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZIC4Q8N9L1 334 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TOR1AIP2Q8NFQ8 470 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR7G1Q8NGA0 311 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR51A4Q8NGJ6 313 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 IL17DQ8TAD2 202 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RASSF5Q8WWW0 418 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NR4A3Q92570 626 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FCGR1BQ92637 280 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SLC22A18Q96BI1 424 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RNFT2Q96EX2 444 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PERPQ96FX8 193 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TNFRSF13CQ96RJ3 184 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 IL4I1Q96RQ9 567 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SLC19A3Q9BZV2 496 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FGF23Q9GZV9 251 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 RACGAP1Q9H0H5 632 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DCSTAMPQ9H295 470 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MTIF3Q9H2K0 278 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 MMP27Q9H306 513 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CDCP1Q9H5V8 836 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF703Q9H7S9 590 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 EVA1AQ9H8M9 152 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PLEKHA1Q9HB21 404 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PLGRKTQ9HBL7 147 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 HRASLS2Q9NWW9 162 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ASB6Q9NWX5 421 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OCIAD1Q9NX40 245 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF319Q9P2F9 582 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PHF11Q9UIL8 331 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NDRG2Q9UN36 371 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 STUB1Q9UNE7 303 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DNAH7Q8WXX0 4024 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 A0A0G2JMM0 328 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A1W2PPB8 328 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A1W2PRS3 328 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRAPPC13A5PLN9 417 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EFCAB10A6NFE3 127 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CCDC160A6NGH7 325 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SERINC4A6NH21 518 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A6NLC8 198 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EFCAB7A8K855 629 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KIR3DP1A8MWS1 328 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PTGES3LE9PB15 166 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MASP2O00187 686 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GABRPO00591 440 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC28A2O43868 658 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF217O75362 1048 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRIM3O75382 744 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 STX11O75558 287 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR7A10O76100 309 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SOX30O94993 753 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 AKR7A3O95154 331 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SPDEFO95238 335 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 RAB36O95755 333 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 APEHP13798 732 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 ACP1P24666 158 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EDNRAP25101 427 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 AKT2P31751 481 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CHI3L1P36222 383 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 PEX19P40855 299 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ATP12AP54707 1039 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 C21orf59P57076 290 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 IL5RAQ01344 420 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ASAH1Q13510 395 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KLF9Q13886 244 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRAM2Q15035 370 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CDK5R1Q15078 307 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SPHARQ15513 63 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 NTRK2Q16620 822 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DEFB133Q30KQ1 61 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GXYLT1Q4G148 440 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DCST1Q5T197 706 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EEF1A1P5Q5VTE0 462 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 HIST2H2AA3Q6FI13 130 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GDPGP1Q6ZNW5 385 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ABHD13Q7L211 337 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TIPARPQ7Z3E1 657 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 EGFL6Q8IUX8 553 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms