RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SCPEP1Q9HB40 452 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 GAR1Q9NY12 217 aaKnown RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 PPT2Q9UMR5 302 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 GPR55Q9Y2T6 319 aaPredicted RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 CHST2Q9Y4C5 530 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 SMCHD1A6NHR9 2005 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 BLACEA4D250 179 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TEAD1P28347 426 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 CLEC9AQ6UXN8 241 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TMPPEQ6ZT21 453 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 BAP18Q8IXM2 172 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR2AK2Q8NG84 335 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 RSPRY1Q96DX4 576 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ASB16Q96NS5 453 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 RBM24Q9BX46 236 aaKnown RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 SEMA4CQ9C0C4 833 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 CHST8Q9H2A9 424 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 RAB22AQ9UL26 194 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 SLC5A10A0PJK1 596 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TMEM235A6NFC5 223 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ZNF593O00488 134 aaPredicted RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 F13BP05160 661 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ECI1P42126 302 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 HBG1P69891 147 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 HBG2P69892 147 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 BDH1Q02338 343 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 UQCC3Q6UW78 93 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 CD300LGQ6UXG3 332 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 RHOUQ7L0Q8 258 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TMEM255BQ8WV15 326 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 MYEOVQ96EZ4 313 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 NMNAT3Q96T66 252 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 VPS25Q9BRG1 176 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 NXF5Q9H1B4 397 aaKnown RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 KLF15Q9UIH9 416 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR6C76A6NM76 312 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 FTCDNL1E5RQL4 147 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 P04436 131 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 EIF4EP06730 217 aaKnown RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 MYOGP15173 224 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 NME1P15531 152 aaKnown RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 GPR85P60893 370 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 MSMO1Q15800 293 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 GLYR1Q49A26 553 aaPredicted RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 OR9K2Q8NGE7 335 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 NUDT8Q8WV74 236 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 ADOQ96SZ5 270 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 RHNO1Q9BSD3 238 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 CBLCQ9ULV8 474 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 FLVCR2Q9UPI3 526 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PRAMEF27A3QJZ7 478 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 KDM4EB2RXH2 506 aaPredicted RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 DCTN6O00399 190 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PSMB6P28072 239 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 SLC35D3Q5M8T2 416 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PRAMEF9Q5VWM5 478 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 OR5M10Q6IEU7 315 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 SLC22A24Q8N4F4 322 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 FOXN4Q96NZ1 517 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TOLLIPQ9H0E2 274 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 LRIT1Q9P2V4 623 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 NCDNQ9UBB6 729 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 ASH2LQ9UBL3 628 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TMEM202A6NGA9 273 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PTAFRP25105 342 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TMEM240Q5SV17 173 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 GLYATL3Q5SZD4 288 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 CORO6Q6QEF8 472 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 NKAIN3Q8N8D7 197 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 FAM174AQ8TBP5 190 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 OR1E3Q8WZA6 343 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TM4SF18Q96CE8 201 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 UHRF2Q96PU4 802 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 ACOXLQ9NUZ1 547 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 SBF2Q86WG5 1849 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 DLEC1Q9Y238 1755 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 GFYI3L273 518 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PMP2P02689 132 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TAF9Q16594 264 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TMEM31Q5JXX7 168 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 Q6ZRG5 221 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 SLC35D2Q76EJ3 337 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 SKA3Q8IX90 412 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 TEAD3Q99594 435 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 PDCD1LG2Q9BQ51 273 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 ZMAT3Q9HA38 289 aaKnown RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 TAS2R5Q9NYW4 299 aa10.58□□□□□ -0.72
VPS39-201ENST00000318006 MRPS28Q9Y2Q9 187 aaKnown RBP10.58□□□□□ -0.72
VPS39-201ENST00000318006 ARGFXA6NJG6 315 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 ZNF728P0DKX0 622 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 CSNK1G2P78368 415 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 PDLIM3Q53GG5 364 aaPredicted RBP10.57□□□□□ -0.72
VPS39-201ENST00000318006 FAM74A1Q5RGS3 127 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 ACSM5Q6NUN0 579 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 DPY19L2P2Q6ZN68 376 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 TCTN2Q96GX1 697 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 TSSK2Q96PF2 358 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 METTL9Q9H1A3 318 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 TM7SF3Q9NS93 570 aa10.57□□□□□ -0.72
VPS39-201ENST00000318006 PLEK2Q9NYT0 353 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms