RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CD300LBA8K4G0 201 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CEBPZOSA8MTT3 80 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 J3QLW9 94 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SLCO2B1O94956 709 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 NDUFB6O95139 128 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 NUDT3O95989 172 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF19P17023 458 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 HOXA11P31270 313 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CDK5Q00535 292 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 GPM6BQ13491 265 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ODF4Q2M2E3 257 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PAGE3Q5JUK9 113 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ABHD17BQ5VST6 288 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 XAF1Q6GPH4 301 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF322Q6U7Q0 402 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF595Q8IYB9 648 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 OR51G2Q8NGK0 314 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PIK3IP1Q96FE7 263 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TIMD4Q96H15 378 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF582Q96NG8 517 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TUBA4BQ9H853 241 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 POT1Q9NUX5 634 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 MYOTQ9UBF9 498 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LYZL6O75951 148 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 GOSR1O95249 250 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 MT-ND4P03905 459 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF17P17021 662 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 HIST1H1TP22492 207 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ERVPABLB-1P60509 514 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SMAGPQ0VAQ4 97 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RAB33AQ14088 237 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 GUCA2BQ16661 112 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 DHRS11Q6UWP2 260 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 BTNL3Q6UXE8 466 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CLEC10AQ8IUN9 316 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 C2orf73Q8N5S3 287 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM239Q8WW34 195 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 DPH7Q9BTV6 452 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LIN28AQ9H9Z2 209 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 NHSL1Q5SYE7 1610 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMX2-CTNND1H3BSU7 103 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SERPINA5P05154 406 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 MELTFP08582 738 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LIMS3P0CW19 117 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LIMS4P0CW20 117 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ENPP1P22413 925 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RABGGTBP53611 331 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 AKR1C1Q04828 323 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SRYQ05066 204 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 STK11Q15831 433 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM97Q5BJF2 176 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM236Q5W0B7 351 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF776Q68DI1 518 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RGMBQ6NW40 437 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 OR51F2Q8NH61 342 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KCNE4Q8WWG9 221 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KHSRPQ92945 711 aaKnown RBP eCLIP4.85□□□□□ -1.632e-6■■■□□ 17.2
SCN1A-201ENST00000303395 RPS10P5Q9NQ39 176 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 C14orf119Q9NWQ9 140 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 EXO1Q9UQ84 846 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RASD1Q9Y272 281 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 COL24A1Q17RW2 1714 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 A0A0A6YYJ9 748 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ANKRD30BLA7E2S9 258 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 XRCC3O43542 346 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PLRG1O43660 514 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 DOK2O60496 412 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SIX3O95343 332 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PLATP00750 562 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ALPIP09923 528 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PGA3P0DJD8 388 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TACR1P25103 407 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CATR1Q13166 79 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PCGF3Q3KNV8 242 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CRTC1Q6UUV9 634 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM229BQ8NBD8 167 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 OR5M9Q8NGP3 310 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 REEP6Q96HR9 211 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KCNA7Q96RP8 456 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 COL18A1P39060 1754 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ARPC1BO15143 372 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 C6orf47O95873 294 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 IGLV3-25P01717 112 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CSNK1A1P48729 337 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ERVS71-1P61550 626 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FOXK2Q01167 660 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 DOC2BQ14184 412 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CLEC12BQ2HXU8 276 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CHADLQ6NUI6 762 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SULF2Q8IWU5 870 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PYROXD2Q8N2H3 581 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RNF175Q8N4F7 328 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FAM83FQ8NEG4 500 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 MVB12AQ96EY5 273 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 GMLQ99445 158 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 VCX2Q9H322 139 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SIDT1Q9NXL6 827 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF586Q9NXT0 402 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF230Q9UIE0 474 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 OR1A2Q9Y585 309 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms