RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 GAAP10253 952 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 CD8BP10966 210 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 IFNGR1P15260 489 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 SHC1P29353 583 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 SDC2P34741 201 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 SFTPDP35247 375 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 CYB561P49447 251 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 DMKNQ6E0U4 476 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-202ENST00000297979 SLC35D2Q76EJ3 337 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 AKAP14Q86UN6 197 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 CDC20BQ86Y33 519 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 IL22RA1Q8N6P7 574 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 NKD1Q969G9 470 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 INTS14Q96SY0 518 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 MNTQ99583 582 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 KCNN2Q9H2S1 579 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 MARCH7Q9H992 704 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 ST6GALNAC2Q9UJ37 374 aa12.79□□□□□ -0.36
C9orf3-202ENST00000297979 SLC16A7O60669 478 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 CBR3O75828 277 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 DNASE1L1P49184 302 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 OR2B6P58173 313 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 SLC3A1Q07837 685 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 TMEM176BQ3YBM2 270 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-202ENST00000297979 RAET1LQ5VY80 246 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 TMEM91Q6ZNR0 172 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 OR6N2Q8NGY6 317 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 IP6K3Q96PC2 410 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 KCNS3Q9BQ31 491 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 ACOXLQ9NUZ1 547 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 SPEF1Q9Y4P9 236 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 ZNF17P17021 662 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 CD82P27701 267 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 NBL1P41271 181 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 INSL4Q14641 139 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 DCAF10Q5QP82 559 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 TMPRSS12Q86WS5 348 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 NEIL3Q8TAT5 605 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 PGLYRP3Q96LB9 341 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 KLHL15Q96M94 604 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 KNTC1P50748 2209 aa12.78□□□□□ -0.36
C9orf3-202ENST00000297979 IGLV1-36A0A0B4J1U3 117 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 A0A0G2JMM0 328 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 A0A1W2PPB8 328 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 A0A1W2PRS3 328 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 KIR3DP1A8MWS1 328 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 OGG1O15527 345 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 ZIC3O60481 467 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 CLEC2LP0C7M8 214 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 CRABP1P29762 137 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 SIRPAP78324 504 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 OC90Q02509 493 aaPredicted RBP12.77□□□□□ -0.36
C9orf3-202ENST00000297979 HNRNPA0Q13151 305 aaKnown RBP12.77□□□□□ -0.36
C9orf3-202ENST00000297979 CDK5R1Q15078 307 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 ADAD1Q96M93 576 aaKnown RBP12.77□□□□□ -0.36
C9orf3-202ENST00000297979 WDR76Q9H967 626 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 SMURF1Q9HCE7 757 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 STMN3Q9NZ72 180 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 B3GAT1Q9P2W7 334 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 KLHDC2Q9Y2U9 406 aa12.77□□□□□ -0.36
C9orf3-202ENST00000297979 GPANK1O95872 356 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 HLA-DQA2P01906 255 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 CTLA4P16410 223 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 CCDC58Q4VC31 144 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF684Q5T5D7 378 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 RPL22L1Q6P5R6 122 aaKnown RBP12.77□□□□□ -0.37
C9orf3-202ENST00000297979 PLEKHG7Q6ZR37 379 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 BTLAQ7Z6A9 289 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF227Q86WZ6 799 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 MIB2Q96AX9 1013 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 SMIM19Q96E16 107 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 DHRS9Q9BPW9 319 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 CCDC86Q9H6F5 360 aaKnown RBP12.77□□□□□ -0.37
C9orf3-202ENST00000297979 MED29Q9NX70 200 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 TRAPPC4Q9Y296 219 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 TMEM14AQ9Y6G1 99 aa12.77□□□□□ -0.37
C9orf3-202ENST00000297979 PRR32B1ATL7 298 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 CASKO14936 926 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 RBMS1P29558 406 aaKnown RBP12.76□□□□□ -0.37
C9orf3-202ENST00000297979 P2RY4P51582 365 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 FAM209BQ5JX69 171 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 FAM220AQ7Z4H9 259 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 KCTD20Q7Z5Y7 419 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 UEVLDQ8IX04 471 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 USB1Q9BQ65 265 aaKnown RBP12.76□□□□□ -0.37
C9orf3-202ENST00000297979 TSPAN10Q9H1Z9 355 aaPredicted RBP12.76□□□□□ -0.37
C9orf3-202ENST00000297979 IQCMA0A1B0GVH7 501 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 OR2M5A3KFT3 312 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 SULT2B1O00204 365 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 VAMP1P23763 118 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 EDNRAP25101 427 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 PCP4P48539 62 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 POU3F4P49335 361 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 GDI2P50395 445 aaKnown RBP12.76□□□□□ -0.37
C9orf3-202ENST00000297979 SLC35A1P78382 337 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 AIMP2Q13155 320 aaKnown RBP12.76□□□□□ -0.37
C9orf3-202ENST00000297979 ABHD17BQ5VST6 288 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 LIN54Q6MZP7 749 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 DNM1P34Q6PK57 102 aa12.76□□□□□ -0.37
C9orf3-202ENST00000297979 TMPPEQ6ZT21 453 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms